Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_D20
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|...    25   3.3  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   4.3  
SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|...    25   5.7  
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c...    25   5.7  
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc...    24   7.6  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    24   7.6  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    24   7.6  
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    24   10.0 

>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 342

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +3

Query: 279 FKYQIILLYSN*LLHSKVCFHYYVEHHNP 365
           ++++ ++LY+  +L   +CF + VEH  P
Sbjct: 134 WRWRDVILYTEEVLLEALCFDFTVEHPYP 162


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -1

Query: 274  HLMYFTEKQNFKRRFYFADHL 212
            H   F+E ++F++R + A+H+
Sbjct: 2138 HFYSFSESEDFRKRLFAAEHM 2158


>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 290

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 298 YFTVTNYFTVKFVFTTTLNIIIHRV 372
           YF    Y TV++V  T +  +IH +
Sbjct: 127 YFVWDLYITVRYVHITGIGFVIHAI 151


>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 334

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -1

Query: 283 LNNHLMYFTEKQNFKRRFYFADHLTGSTYVQHGQTVFL*ND 161
           +  HL YF E QN  R  YF +  +GS    H     L ND
Sbjct: 166 IEQHLQYFHEWQNKPRVEYFWNE-SGSWDQHHEYLTTLQND 205


>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
           Pho4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 463

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -1

Query: 292 IWYLNNHLMYFTEKQ--NFKRRFYFADHLTGSTYVQH 188
           +W L   +++  + Q   F+  FYF DHL G+  V H
Sbjct: 8   LWLLAASIVHAGKSQFEAFENEFYFKDHL-GTISVYH 43


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 86  LNIHSKYTIS*KNNTLHISL 145
           L +HSKY +S   N +++SL
Sbjct: 30  LRLHSKYAVSHIKNAINVSL 49


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 271 LMYFTEKQNFKRRFYFADHLTGSTYVQHGQTVFL*NDY 158
           +MY T KQ F+R F+    L  + +V       L NDY
Sbjct: 437 VMYVT-KQVFQRAFFTVSSLFFTRFVNESLIPILRNDY 473


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 130 ITYKFSEKNHSHFIKIQFDRVAHKW 204
           + ++F E+NH H  KI+   +A  W
Sbjct: 365 LLFQFQEQNHIHHKKIRRKLLAAGW 389


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,309,489
Number of Sequences: 5004
Number of extensions: 23676
Number of successful extensions: 47
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)