Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_D20
(400 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1584 + 27907345-27907357,27907693-27908039,27908202-279083... 29 1.4
12_01_0984 - 9985300-9985804,9985894-9986933 28 3.1
08_02_0514 + 18021365-18022527,18023489-18023660 27 5.5
12_01_0612 - 5044639-5044858,5045010-5045167,5045440-5045684,504... 26 9.5
07_01_0482 + 3627980-3628270,3628785-3629012,3629116-3629237,362... 26 9.5
04_04_1066 - 30533114-30533185,30533507-30533614,30533716-305340... 26 9.5
03_06_0508 + 34417540-34417649,34418239-34418338,34418445-344184... 26 9.5
03_01_0579 - 4274927-4274998,4275320-4275427,4275529-4275904,427... 26 9.5
01_01_0527 + 3867621-3867764,3867855-3868128,3868216-3868315,386... 26 9.5
>07_03_1584 +
27907345-27907357,27907693-27908039,27908202-27908319,
27908653-27908705,27908808-27908978,27909447-27909643,
27909729-27909807,27909954-27909992,27910202-27910321,
27910417-27910518,27910654-27910737,27910832-27911074,
27911156-27911281,27911365-27911439,27911534-27911605,
27911807-27911926,27912075-27912172,27912643-27912802,
27912867-27912980,27913029-27913121,27913122-27913319,
27913404-27913497,27914032-27914192
Length = 958
Score = 29.1 bits (62), Expect = 1.4
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 315 LLHSKVCFHYYVEHH 359
L H +CFHYY+++H
Sbjct: 423 LHHDVICFHYYIQYH 437
>12_01_0984 - 9985300-9985804,9985894-9986933
Length = 514
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 65 TKLSQFHLNIHSKYTIS*KNNTLHISLVKKTIVIL*KYSLTVLHIS 202
TKL H+ +HS + + + +K ++ +L K+SL L IS
Sbjct: 281 TKLRSLHIGLHSSLKLCYHDMRTYEEALKSSLTVLGKHSLRSLVIS 326
>08_02_0514 + 18021365-18022527,18023489-18023660
Length = 444
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 297 LLYSN*LLHSKVCFHYYVEHHNPQS 371
+LYS + H K C YY++ N Q+
Sbjct: 247 VLYSKIVTHCKGCLFYYIDKKNQQN 271
>12_01_0612 -
5044639-5044858,5045010-5045167,5045440-5045684,
5046006-5046294,5047540-5048561,5049320-5049389
Length = 667
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Frame = +1
Query: 130 ITYKFSEKNHSHFIKIQFDRVA---HKWILSNGPR 225
+ YK +E+ H+HF+ + D+ A H+ ++ G R
Sbjct: 407 VAYKEAERLHNHFVDQRTDKYAWLNHRIVIPGGKR 441
>07_01_0482 +
3627980-3628270,3628785-3629012,3629116-3629237,
3629747-3629966,3630434-3630576,3631004-3631141,
3631275-3631380
Length = 415
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 83 HLNIHSKYTIS*KNNTLHISLVKKTIV 163
H+NIH ++ S KN + S++ K IV
Sbjct: 378 HVNIHEQFIESLKNLNMRTSMLAKNIV 404
>04_04_1066 -
30533114-30533185,30533507-30533614,30533716-30534091,
30534173-30534330,30534416-30534536,30534613-30534831,
30534923-30535022,30535254-30535383,30535474-30535617
Length = 475
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 393 DVCRKLYYSVDYDVQRSSENKLYCEV 316
D +KLY D D+QRS E+K E+
Sbjct: 204 DPIQKLYLQSDEDMQRSIEHKTLAEL 229
>03_06_0508 +
34417540-34417649,34418239-34418338,34418445-34418478,
34418559-34418635,34418929-34419005,34419060-34419224,
34419306-34419420,34419546-34419650
Length = 260
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/33 (39%), Positives = 24/33 (72%)
Frame = -1
Query: 283 LNNHLMYFTEKQNFKRRFYFADHLTGSTYVQHG 185
L+++ Y+T+K+ K++ AD +TG+ YVQ+G
Sbjct: 122 LDSYQGYYTDKK--KQKETGADVVTGTRYVQNG 152
>03_01_0579 -
4274927-4274998,4275320-4275427,4275529-4275904,
4275986-4276143,4276229-4276349,4276426-4276644,
4276736-4276835,4276923-4277196,4277287-4277430
Length = 523
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 393 DVCRKLYYSVDYDVQRSSENKLYCEV 316
D +KLY D D+QRS E+K E+
Sbjct: 252 DPIQKLYLQSDEDMQRSIEHKTLAEL 277
>01_01_0527 +
3867621-3867764,3867855-3868128,3868216-3868315,
3868407-3868625,3868702-3868822,3868908-3869065,
3869147-3869522,3869624-3869731,3870053-3870124
Length = 523
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 393 DVCRKLYYSVDYDVQRSSENKLYCEV 316
D +KLY D D+QRS E+K E+
Sbjct: 252 DPIQKLYLQSDEDMQRSIEHKTLAEL 277
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,016,005
Number of Sequences: 37544
Number of extensions: 109163
Number of successful extensions: 210
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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