Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_D20
         (400 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16492| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_30571| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_56284| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  
SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034)                    26   9.8  
SB_39659| Best HMM Match : 7tm_1 (HMM E-Value=5.7e-27)                 26   9.8  

>SB_16492| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 289 WYLNNHLMYFTEKQNFKRRFYF 224
           ++ NN+ ++FT  QN+ R  YF
Sbjct: 233 YHSNNYRLFFTHNQNYYRNSYF 254


>SB_30571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 330 VCFHYYVEHHNP 365
           +C HYY +HH+P
Sbjct: 66  LCLHYYSQHHHP 77


>SB_56284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 336 NKLYCEVVSYCKVVLFGT*II 274
           NK+Y  +V+ C VVLFG  I+
Sbjct: 169 NKIYTLIVNVCIVVLFGITIV 189


>SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034)
          Length = 3404

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +2

Query: 47   LSFYIKTKLSQFHLNIHSKYTIS*KNNTLHISLVKKTIVIL*KYSLTVLHISGSCQ 214
            LS  IK  LS+F LNI S       +NTL +   K +++++    L     +  CQ
Sbjct: 2666 LSLVIKVDLSRFGLNITSPEIRLTDSNTLVLLSTKTSVMLVLDIDLVAKTHTKVCQ 2721


>SB_39659| Best HMM Match : 7tm_1 (HMM E-Value=5.7e-27)
          Length = 334

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 336 NKLYCEVVSYCKVVLFGT*II 274
           NK+Y  +V+ C VVLFG  I+
Sbjct: 169 NKIYMFIVNVCIVVLFGITIV 189


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,986,974
Number of Sequences: 59808
Number of extensions: 153264
Number of successful extensions: 408
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)