Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_D20
(400 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g22180.3 68414.m02773 SEC14 cytosolic factor family protein /... 29 1.5
At1g22180.2 68414.m02774 SEC14 cytosolic factor family protein /... 29 1.5
At1g22180.1 68414.m02772 SEC14 cytosolic factor family protein /... 29 1.5
At5g45580.1 68418.m05600 myb family transcription factor contain... 28 2.6
At2g40840.1 68415.m05042 glycoside hydrolase family 77 protein c... 28 2.6
At2g19560.1 68415.m02285 proteasome protein-related weak similar... 27 3.5
At5g54130.1 68418.m06739 calcium-binding EF hand family protein ... 27 6.1
At5g15280.1 68418.m01790 pentatricopeptide (PPR) repeat-containi... 26 8.0
>At1g22180.3 68414.m02773 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein contains Pfam
profile: PF00650 CRAL/TRIO domain; similar to
polyphosphoinositide binding protein Ssh1p (GI:|2739044)
{Glycine max}; similar to Phosphatidylinositol Transfer
Protein Sec14p (GI:2780955) [Saccharomyces cerevisiae]
Length = 249
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 173 KYSLTVLHISGSCQMVREIKSAFKVLFFCEVH*MII*VPNN 295
KY TVL + SCQ + K ++L +C + I+ +P+N
Sbjct: 39 KYGRTVLVMRPSCQNTKSYKGQIRILVYC-MENAILNLPDN 78
>At1g22180.2 68414.m02774 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein contains Pfam
profile: PF00650 CRAL/TRIO domain; similar to
polyphosphoinositide binding protein Ssh1p (GI:|2739044)
{Glycine max}; similar to Phosphatidylinositol Transfer
Protein Sec14p (GI:2780955) [Saccharomyces cerevisiae]
Length = 314
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 173 KYSLTVLHISGSCQMVREIKSAFKVLFFCEVH*MII*VPNN 295
KY TVL + SCQ + K ++L +C + I+ +P+N
Sbjct: 104 KYGRTVLVMRPSCQNTKSYKGQIRILVYC-MENAILNLPDN 143
>At1g22180.1 68414.m02772 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein contains Pfam
profile: PF00650 CRAL/TRIO domain; similar to
polyphosphoinositide binding protein Ssh1p (GI:|2739044)
{Glycine max}; similar to Phosphatidylinositol Transfer
Protein Sec14p (GI:2780955) [Saccharomyces cerevisiae]
Length = 249
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 173 KYSLTVLHISGSCQMVREIKSAFKVLFFCEVH*MII*VPNN 295
KY TVL + SCQ + K ++L +C + I+ +P+N
Sbjct: 39 KYGRTVLVMRPSCQNTKSYKGQIRILVYC-MENAILNLPDN 78
>At5g45580.1 68418.m05600 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 308
Score = 27.9 bits (59), Expect = 2.6
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 127 YITYKFSEKNHSHFIKIQFD 186
YI Y+F+ H+ F+K++FD
Sbjct: 122 YIIYEFAFSRHNGFVKLEFD 141
>At2g40840.1 68415.m05042 glycoside hydrolase family 77 protein
contains Pfam profiles PF02446:
4-alpha-glucanotransferase, PF00686: Starch binding
domain; contains a non-consensus AT-AC intron between at
intron 5
Length = 955
Score = 27.9 bits (59), Expect = 2.6
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = +3
Query: 297 LLYSN*LLHSKVCFHYYVEHH 359
L+ + L ++ +CFHYY+++H
Sbjct: 447 LISKDNLHYNTICFHYYIQYH 467
>At2g19560.1 68415.m02285 proteasome protein-related weak similarity
to 26S proteasome non-ATPase regulatory subunit 3 (26S
proteasome regulatory subunit S3) (p58) (Transplantation
antigen P91A) (Tum-P91A antigen) (Swiss-Prot:P14685)
[Mus musculus]
Length = 413
Score = 27.5 bits (58), Expect = 3.5
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +1
Query: 103 VYDKL-KK*YITYKFSEKNHSHFIKIQFDRVAHKWILSNGPRNKI-CV*SFVFL*STLND 276
VY +L KK YI K S+ +H +K++ A +W+ + +++ C+ + + + +
Sbjct: 327 VYQRLMKKIYINQKLSDPARAHQLKLEGIAKALRWLDMDMDLDEVECIMTILIYKNLVKG 386
Query: 277 YLSTK 291
YL+ K
Sbjct: 387 YLAHK 391
>At5g54130.1 68418.m06739 calcium-binding EF hand family protein
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 232
Score = 26.6 bits (56), Expect = 6.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 184 DRVAHKWILSNGPRNKICV*SFVFL 258
D AHKW+ R IC F++L
Sbjct: 38 DSDAHKWVSHRNHRGNICAVDFIWL 62
>At5g15280.1 68418.m01790 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1227
Score = 26.2 bits (55), Expect = 8.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 321 HSKVCFHYYVEHHNPQSSIIY 383
HSK+ FH V+ H+P ++ Y
Sbjct: 617 HSKLIFHKMVQMHHPIDNVTY 637
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,283,703
Number of Sequences: 28952
Number of extensions: 105471
Number of successful extensions: 225
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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