Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_D19
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    25   3.8  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    25   5.0  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   6.6  
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc...    25   6.6  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    25   6.6  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    24   8.7  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    24   8.7  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    24   8.7  

>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
 Frame = +2

Query: 137  SRVRRQAGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYD-- 310
            S + +++G + +  +GT G    +   G    + S    +++ + + + AA   +  +  
Sbjct: 1228 SVINQESGKIELFMEGT-GLQAVMNTEGIVGTKTSTNHVMEMKDVLGIEAARYSIISEIG 1286

Query: 311  -NVNGHGATLTKTHIPGFGDKMTAAGKV 391
              +  HG T+   HI   GD MT  G+V
Sbjct: 1287 YTMAKHGLTVDPRHIMLLGDVMTCKGEV 1314


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 308 DNVNGHGATLTKTHIPGFGDKMTAAGKVNL 397
           +N     AT T T   GFGDK + AGK N+
Sbjct: 251 ENKESTTATSTLTDA-GFGDKSSTAGKHNV 279


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 134  NSRVRRQAGALTVNSDGTSGAMVKVPITGNENH-RLSALGSVDLT 265
            NS V +  G+ + +S  T      +PI   ENH  L++ GS  ++
Sbjct: 1439 NSPVTKVPGSSSTSSSSTQPINSTIPINPLENHGMLNSFGSTTVS 1483


>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 169 CQLRRHLRCYGQGTYNWKR 225
           C ++R L C  Q TYN +R
Sbjct: 186 CTVQRGLECLSQSTYNVER 204


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +2

Query: 179 DGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTKTHIPG 358
           D +SGA++ V  T          GS+  T+ +     T+G   + V     T+T+T I G
Sbjct: 792 DTSSGAVIVVEPTAGTVTETIVSGSIPFTSTIPAQGTTSG-TVEVVEPTAGTVTETIISG 850


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 178 RRHLRCYGQGTYNWKRKSQAQCPWLR 255
           + HL  YG+ TYN    +  Q  W +
Sbjct: 174 KNHLEVYGRTTYNIVLHNSWQASWFK 199


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 967

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 260  LTNQMKLGAATAGLAYDNVNGHGATLTKTHIPGFGDKM 373
            +T+  +  A    LA  N+ G  + +  TH+PG G  +
Sbjct: 922  ITDLKQYCATEMNLANRNMGGRLSQIISTHLPGDGQSV 959


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 107 YEDQPEQWANSRVRRQAGALTVNSDGTSGAMVKVPITGN 223
           YE  PE + N   +R A AL  NS+   G+   V    N
Sbjct: 227 YEQDPEGFVNPYSKRGAAAL-ANSENNKGSEAGVSAKTN 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,820,321
Number of Sequences: 5004
Number of extensions: 34394
Number of successful extensions: 87
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)