Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_D17
         (387 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0517 - 25118232-25118730,25119002-25119273                       28   2.2  
03_02_0269 + 7001891-7002212,7003598-7004037                           28   2.2  
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608...    27   3.9  
12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-10...    26   9.1  
07_01_0601 + 4464745-4465010,4465274-4466582                           26   9.1  
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704     26   9.1  

>03_05_0517 - 25118232-25118730,25119002-25119273
          Length = 256

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +2

Query: 32  DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 142
           D FF++    P GN     T P  VD   P  P + +
Sbjct: 37  DWFFTRKGESPQGNISKEETAPTGVDVTDPGRPGRAF 73


>03_02_0269 + 7001891-7002212,7003598-7004037
          Length = 253

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 167 SHHGREGCRIAWVDNWDD*NRR 102
           + H R+  R+AW D W D +R+
Sbjct: 62  TEHARQRMRVAWADGWVDGSRK 83


>11_04_0321 -
           16359390-16359539,16359674-16359746,16360448-16360845,
           16360919-16362673,16362751-16362861,16363745-16363962,
           16364088-16364196
          Length = 937

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 125 YPPKRYDNPLARGGK 169
           YPPKRY NP+   G+
Sbjct: 859 YPPKRYSNPVGPAGR 873


>12_01_0014 +
           105422-105520,105598-105725,105939-106101,106198-106310,
           106787-106825,107026-107109,107193-107241,107331-107422,
           107680-107809,107906-107982,108058-109676,110024-110221,
           110287-110825
          Length = 1109

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
 Frame = +2

Query: 35  PFFSQPSNGPSG------NYEPISTGPAFVDFNHPNYPP 133
           P FS P+  P+G      ++E ++  P F   N PN PP
Sbjct: 875 PGFSAPARVPTGFSSGFSSHEGLNPPPGFSSHNGPNPPP 913


>07_01_0601 + 4464745-4465010,4465274-4466582
          Length = 524

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 5   SDHVVIANPDPFFSQPSNGPSGNYEPISTGPA 100
           SDH V+  P PF   P++  +  + PI T PA
Sbjct: 50  SDHFVLT-PPPFQITPTSIQNSTWLPIPTSPA 80


>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
          Length = 748

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 163 TTGERVVVSLGWIIGMIEIDERRSSAYGFIISAR 62
           +TG +V + L W++G     E R +A G++  +R
Sbjct: 233 STGGKVPLVLDWVVGKKTCREARRNATGYMCVSR 266


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,236,177
Number of Sequences: 37544
Number of extensions: 126512
Number of successful extensions: 299
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)