Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_D14
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    27   1.1  
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    26   2.6  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   4.5  
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...    25   5.9  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    25   5.9  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    25   5.9  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    25   5.9  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    25   5.9  
SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   7.8  

>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +2

Query: 5   NYNNNIHIVTYFF*DLLILNMNSLKLFC---WLSLASSLWGPFRRRRGIPSRN 154
           NY NN H ++ +    L++++  L+ FC   WL  +SSL   FR R     RN
Sbjct: 535 NYFNNDHDLSRY--GFLLVSLLRLRQFCCHPWLVKSSSLDNSFRIRDSENVRN 585


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 206 PSLQWPRPRLWLKENNH 256
           PS++W  PR WLK   +
Sbjct: 192 PSVKWRMPRFWLKRRTN 208


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 93  CRLRLRYGDRFGGAVESLLGIGESWPENERRSHK 194
           C LRL+      G +E LL   +S  E +  SHK
Sbjct: 308 CSLRLKELQNSNGELEKLLEAAQSSFEEQLESHK 341


>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 291 YKHEKIHKKVNE*LFSFSQSRGLGHCS 211
           Y H K  KKV E L + + SR +  CS
Sbjct: 214 YFHSKAEKKVTEFLRNRNWSRSITECS 240


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 293 YINMRKYIKKLMNDYF 246
           ++N+R YI+K MN+ F
Sbjct: 373 FLNLRSYIRKSMNNVF 388


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 177 HSLANFLQFLEGIPRRRRN-GPHSEDASDNQQNNF 76
           HS A+  +  E + RRR N G HS   SD+  N F
Sbjct: 470 HSEASISKDYEILKRRRSNSGVHSLTRSDSSFNGF 504


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 243 FSQSRGLGHCSDGWTST 193
           F  +  L HCSDGW  T
Sbjct: 333 FRHAHVLVHCSDGWDRT 349


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 83  IILVNSCLILINLKKNTLQYEYYCCS 6
           ++L+N  L+L++LKK   +   Y CS
Sbjct: 669 LVLINGKLVLLSLKKQHSKELLYQCS 694


>SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 100

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 25  YCNVFFLRFINIKHEFTKIILLVVACVF 108
           YC  F     N+KH +  + ++  +C+F
Sbjct: 56  YCQRFLFSS-NLKHNYVNLNIIFTSCIF 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,392,553
Number of Sequences: 5004
Number of extensions: 27463
Number of successful extensions: 84
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)