Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_D13
(497 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17034| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_8875| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09) 29 2.1
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 29 2.1
SB_30941| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05) 29 2.8
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_621| Best HMM Match : SNF2_N (HMM E-Value=0) 27 6.5
SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023) 27 8.6
SB_12036| Best HMM Match : G_glu_transpept (HMM E-Value=0) 27 8.6
>SB_17034| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 230 LPAKGTLTPA-PEVPSELSVRAPCASLRTLELVNSSGSS 117
L AKG L+ P E +RAPC+SL E SSG S
Sbjct: 13 LEAKGRLSERRPSAKCESILRAPCSSLEDKESDESSGLS 51
>SB_8875| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 189
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 327 RPRSKSHGYTHPRVRRXGDSC 389
RP S+SHG HPRV D+C
Sbjct: 92 RPTSQSHGNRHPRVPIDKDNC 112
>SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)
Length = 1084
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = +3
Query: 321 CKRPRSKSHGYTHPRVRRXGDSCRQS--ESLPQRLPRHHSEGFRHQK 455
C P K+ HP R+ GD+C E + + LP H E R K
Sbjct: 361 CSEPCPKTLECGHPCARKCGDTCTSKCIEKIEKTLPCGHKETVRCYK 407
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 29.1 bits (62), Expect = 2.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 330 PRSKSHGYTHPRVRRXGDSC 389
P + SH YTH VR GD+C
Sbjct: 260 PHALSHNYTHLAVRYYGDAC 279
>SB_30941| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 330
Score = 29.1 bits (62), Expect = 2.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 330 PRSKSHGYTHPRVRRXGDSC 389
P + SH YTH VR GD+C
Sbjct: 260 PHALSHNYTHLAVRYYGDAC 279
>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
Length = 1878
Score = 28.7 bits (61), Expect = 2.8
Identities = 25/63 (39%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = -1
Query: 395 LPAAVT-XSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAK 219
LPAAV P V+ TP L ATP VA LVK+K P L I K
Sbjct: 256 LPAAVPPIKTKPAAPSPVKATPTVAPLVKATPMVAP-----LVKAKLPQPLRILYICEEK 310
Query: 218 GTL 210
GT+
Sbjct: 311 GTV 313
>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1234
Score = 27.9 bits (59), Expect = 4.9
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = -1
Query: 404 RFTLPAAVTXSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLP 225
+ +P ++T S PG TP P +L+S TP+ + L K+ P++L+ S P
Sbjct: 1041 KLPVPVSLT-SKTPGPVSLTSKTPGPVSLTSKTPSPVS----LTSKTPGPVSLSSKTSGP 1095
Query: 224 AKGT-LTPAP 198
T TP P
Sbjct: 1096 VSLTSKTPGP 1105
>SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1432
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Frame = +3
Query: 327 RPRSKSHGYTHPRV-RRXGDSCRQSESLPQ-------RLPRHHSEGFRHQKYARYRXCS 479
R R + HG HPR R D R + P+ LPR + + +R + + R R S
Sbjct: 1323 RDRDRYHGSEHPRSHERSSDYSRSKDLHPRSYDRGTDHLPRSYEKSYRREDHHRSREYS 1381
>SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023)
Length = 1016
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 471 SDIWHISGGESLRCDVVVIVVEEIHFAGSCHLVSE 367
+D++ S G L D V + +++H G HL S+
Sbjct: 501 NDVYLTSDGVHLTSDDVHLTGDDVHLTGDVHLTSD 535
>SB_12036| Best HMM Match : G_glu_transpept (HMM E-Value=0)
Length = 646
Score = 27.1 bits (57), Expect = 8.6
Identities = 23/95 (24%), Positives = 44/95 (46%)
Frame = +1
Query: 133 LTSSRVRRDAHGALTLNSDGTSGAGVKVPFAGNDKNIVSAIGSLDLTNRQKLGAATAGVA 312
L R +DA + D T ++ F N + V G ++ R + + T ++
Sbjct: 398 LGDPRYMKDADKVVKKMVDQTHSNNLR-KFIDNRTHPVKYYGPINY--RTDVTSGTTHLS 454
Query: 313 LDNVNGHGVSLTDTHIPGFGDXVTAAGKVNLFHND 417
+ + +G+GVSLT + FG + + K+ + +ND
Sbjct: 455 VVDADGNGVSLTSSINKYFGSKIRSK-KLGIIYND 488
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,616,658
Number of Sequences: 59808
Number of extensions: 313201
Number of successful extensions: 926
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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