Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_D13
         (497 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13980.1 68414.m01647 pattern formation protein (EMB30) (GNOM...    29   1.7  
At3g27925.1 68416.m03484 DegP protease, putative SP:022609; almo...    29   2.3  
At2g23300.1 68415.m02781 leucine-rich repeat transmembrane prote...    28   4.0  
At5g18550.1 68418.m02193 zinc finger (CCCH-type) family protein ...    27   5.3  
At4g37130.1 68417.m05258 hydroxyproline-rich glycoprotein family...    27   5.3  
At1g71320.1 68414.m08232 S locus F-box-related / SLF-related con...    27   5.3  
At5g65160.1 68418.m08195 tetratricopeptide repeat (TPR)-containi...    27   7.0  
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa...    27   9.3  
At3g12350.1 68416.m01540 F-box family protein  ; similar to SKP1...    27   9.3  
At2g37690.1 68415.m04622 phosphoribosylaminoimidazole carboxylas...    27   9.3  

>At1g13980.1 68414.m01647 pattern formation protein (EMB30) (GNOM)
           identical to SP|Q42510; contains Pfam profile PF01369:
           Sec7 domain
          Length = 1451

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 22/63 (34%), Positives = 32/63 (50%)
 Frame = +1

Query: 61  GVQSRYLIVSEPVYYIQHYEEPELLTSSRVRRDAHGALTLNSDGTSGAGVKVPFAGNDKN 240
           GV S Y IVS+PV       E ++  S  +   A GA +L  DG  G G + P +  D +
Sbjct: 249 GVDSDYAIVSKPVEDGNANSEYDVENS--MATFATGAQSLMDDGPVGPGSRKPASPYDLH 306

Query: 241 IVS 249
           I++
Sbjct: 307 IMT 309


>At3g27925.1 68416.m03484 DegP protease, putative SP:022609; almost
           identical to DegP protease precursor GB:AF028842 from
           [Arabidopsis thaliana] (J. Biol. Chem. 273 (12),
           7094-7098 (1998))
          Length = 439

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 23/80 (28%), Positives = 40/80 (50%)
 Frame = -1

Query: 359 MCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVPSEL 180
           +C SV L+   F+L +A+PAV + S   +V + + +      ++      TP+    + L
Sbjct: 83  LCTSVALS---FSLFAASPAVESAS-AFVVSTPKKLQTDELATVRLFQENTPSVVYITNL 138

Query: 179 SVRAPCASLRTLELVNSSGS 120
           +VR    +L  LE+   SGS
Sbjct: 139 AVRQDAFTLDVLEVPQGSGS 158


>At2g23300.1 68415.m02781 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 773

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -1

Query: 386 AVTXSPNPGMCVSVRLTPWPFTLSSAT--PAVAAPSFCLLVKS 264
           +++ S NPG+C      P P   S AT  P  + P+   + KS
Sbjct: 268 SISFSGNPGLCGGPTRNPCPIPSSPATVSPPTSTPALAAIPKS 310


>At5g18550.1 68418.m02193 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 456

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -1

Query: 389 AAVTXSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSK--EPIALT 243
           ++++ SP+P     + + P+P +L +  P+ ++     L+ S   EPI  T
Sbjct: 366 SSLSYSPSPSSLTDMPVAPYPSSLGTLAPSSSSDQCTELISSSSIEPITTT 416


>At4g37130.1 68417.m05258 hydroxyproline-rich glycoprotein family
           protein
          Length = 513

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
 Frame = -1

Query: 380 TXSPNPGMCVSVRLTPWPFTLSS--ATPAVAAPSFCLLVKSKEPIALTIFLSLPAK---- 219
           T +P+ G   S   TP     SS  ATP+  AP+  L   S  P    +F S PA     
Sbjct: 409 TSNPSSGAGFSFLNTPASGPSSSLFATPSSTAPTSSLFGPSPTPTQTPLFGSSPASTFGS 468

Query: 218 -----GTLTPAPEVPSELSVRAP 165
                G  TP+  +PS+     P
Sbjct: 469 TQSLFGQTTPSLTMPSQFGGATP 491


>At1g71320.1 68414.m08232 S locus F-box-related / SLF-related
           contains F-box domain Pfam:PF00646; contains TIGRFAM
           TIGR01640: F-box protein interaction domain; similar to
           S locus F-box (SLF)-S2-like protein (GI:13161528)
           [Antirrhinum hispanicum]
          Length = 392

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 359 MCVSVRLTPWPFTLSSATPAVA 294
           M +S     WPFTLS  TPA+A
Sbjct: 144 MKLSPEFMQWPFTLSYLTPAMA 165


>At5g65160.1 68418.m08195 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 593

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 265 DLTNRQKLGAATAGVALDNVNGHGVSLT 348
           +L N  + G  TAGV   N NG+GV  T
Sbjct: 180 NLGNLNQTGPVTAGVNYGNNNGYGVKRT 207


>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
           domain-containing protein / RNA recognition motif
           (RRM)-containing protein KIAA0122 gene , Homo sapiens,
           EMBL:HSDKG02; contains Pfam profiles  PF00076: RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF01585: G-patch domain, weak hit to PF00641: Zn-finger
           in Ran binding protein and others
          Length = 1105

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 324 KRPRSKSHGYTHPRVRRXGDSCRQSESLPQRLPRHHSEGF 443
           + PR +SHG ++      GD   +SE   +   RH+ + F
Sbjct: 253 RSPRGRSHGRSYREDSYEGDHWNESERRREYEDRHNQDHF 292


>At3g12350.1 68416.m01540 F-box family protein  ; similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 422

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = -2

Query: 160 RPCGL*SLSIVQAPHSVEYSKQVR*QSGIGFERRRTERQAIKRRSSRT 17
           R  G  S  ++ +P+  E   Q+  ++  G +RRR +R+  +R++SRT
Sbjct: 204 RSSGDESDDLISSPNFSEMYTQLANKTSPGGDRRRQKRKEKERQASRT 251


>At2g37690.1 68415.m04622 phosphoribosylaminoimidazole carboxylase,
           putative / AIR carboxylase, putative similar to
           SP|P55195 Phosphoribosylaminoimidazole carboxylase,
           chloroplast precursor (EC 4.1.1.21) (AIR carboxylase)
           (AIRC) {Vigna aconitifolia}; contains Pfam profiles
           PF02222: ATP-grasp domain, PF00731: AIR carboxylase
          Length = 642

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 414 VVEEIHFAGSCHLVSEPGDV 355
           VVE IH    CH+V  P DV
Sbjct: 293 VVETIHRDNICHIVKAPADV 312


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,614,035
Number of Sequences: 28952
Number of extensions: 208846
Number of successful extensions: 618
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)