Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_D12
         (450 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0663 + 5721902-5723176,5724162-5724233,5724405-5724560,572...    28   3.0  
05_06_0268 + 26792845-26792891,26793050-26793830                       28   4.0  
07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485...    27   5.3  
02_05_0874 - 32377906-32378131,32378269-32378384,32378516-323789...    27   7.0  
01_01_0558 + 4098383-4098510,4100462-4100572,4100765-4100853,410...    27   7.0  
06_03_1025 - 26980631-26981286,26981434-26981557,26982290-269824...    27   9.2  
02_05_0157 - 26353971-26354336,26354645-26354726,26354838-263549...    27   9.2  
02_02_0184 - 7581345-7581769,7581880-7582296,7582891-7583661,758...    27   9.2  

>08_01_0663 +
           5721902-5723176,5724162-5724233,5724405-5724560,
           5724655-5724844,5725173-5725255
          Length = 591

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 376 EHVVHSGTDSVEVRNLRNIWHVFSGECFGTEIVVVVME 263
           E + HSG  + +V  L N W+++    F  + VV+V E
Sbjct: 418 ELLAHSGEVNKQVPRLSNFWNMYFTHHFQVDTVVMVRE 455


>05_06_0268 + 26792845-26792891,26793050-26793830
          Length = 275

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +3

Query: 294 KHSPLKTCQIFLKFRTSTLS---VPEWTTCSKITLVHLRPPHTP 416
           KH  ++TC + + + + +     +P+W    + T+   +PP TP
Sbjct: 98  KHRAIRTCLLTVAYHSPSSEPSVIPDWDCSKQSTVNPAQPPFTP 141


>07_01_0646 +
           4853546-4853623,4853732-4855357,4855467-4855751,
           4856131-4856277
          Length = 711

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +2

Query: 20  AGALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHG 193
           AG  + +     G  V   + G +NH +S +G          GA TAG AY+ +N  G
Sbjct: 178 AGHSSTSISAALGMAVARDLLGKKNHVISVIGD---------GAMTAGQAYEAMNNSG 226


>02_05_0874 -
           32377906-32378131,32378269-32378384,32378516-32378921,
           32379023-32379139,32379229-32379291,32380183-32380373
          Length = 372

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 159 AVAAPNFIWLVRSTEPRALSLWFSLPVMGTLTIAPEVPSEL 37
           AV AP  +W  R   PR L+L   L +MG   + P +   L
Sbjct: 53  AVMAPFALWFERRVRPR-LTLIIFLKIMGLAILEPVLDQNL 92


>01_01_0558 +
           4098383-4098510,4100462-4100572,4100765-4100853,
           4100974-4101107,4101337-4101435,4102619-4102994,
           4103883-4104337,4104419-4107409
          Length = 1460

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 330 KFRTSTLSVPEWTTCSKITLVHLRPPHTPMSLTATTTLW 446
           KF     S+ E+ + S  +L   RPP  P+ L    T+W
Sbjct: 730 KFFRHKFSLIEYGSLSNESLPERRPPGRPLELNNLRTIW 768


>06_03_1025 -
           26980631-26981286,26981434-26981557,26982290-26982426,
           26983220-26983355,26983615-26983922,26985159-26985207
          Length = 469

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +2

Query: 23  GALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHG 193
           G     SD  + A V  P    E+ ++   G+V++    +L AAT     D + G G
Sbjct: 23  GLRKCKSDSKATASVLAPPKDVEDLQIEGYGNVNIFTYNELRAATKNFRPDQILGEG 79


>02_05_0157 -
           26353971-26354336,26354645-26354726,26354838-26354933,
           26355365-26356068
          Length = 415

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 374 TCSPLRHRQC*SSELEEYLACF*WRMLW 291
           TCSP+ +    + +LEE++  F  R LW
Sbjct: 339 TCSPIANGGIGALDLEEFICAFHVRWLW 366


>02_02_0184 -
           7581345-7581769,7581880-7582296,7582891-7583661,
           7583894-7584437,7584794-7584961,7585019-7585101,
           7585190-7585631
          Length = 949

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 301 ECFGTEIVVVVMEEIYFTGSRHFVTEPRDMSFCE 200
           ECF  EI+  +MEE+        V E RD+S+ E
Sbjct: 316 ECFAKEILHSIMEELGHDVFCLLVDESRDVSYKE 349


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,737,127
Number of Sequences: 37544
Number of extensions: 291371
Number of successful extensions: 659
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)