Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_D12
         (450 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039719-12|AAB96758.1|  293|Caenorhabditis elegans Hypothetical...    31   0.51 
Z78542-5|CAB01748.1|  915|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U55376-1|AAA98003.1|  434|Caenorhabditis elegans Hypothetical pr...    28   2.7  
AF016425-1|AAD34668.1|  458|Caenorhabditis elegans Hypothetical ...    28   3.6  
Z82267-3|CAB05191.1|  186|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z49132-7|CAA88986.1|  403|Caenorhabditis elegans Hypothetical pr...    27   4.8  
U41995-11|AAA83467.1|  665|Caenorhabditis elegans Hypothetical p...    27   6.3  
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AC024856-1|ABB51172.1|  334|Caenorhabditis elegans Hypothetical ...    27   6.3  
Z92789-6|CAB07218.2|  303|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U46671-5|AAA85750.2|  147|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.     27   8.3  
AF040649-7|AAB95002.1|  295|Caenorhabditis elegans Hypothetical ...    27   8.3  

>AF039719-12|AAB96758.1|  293|Caenorhabditis elegans Hypothetical
           protein K04F10.7 protein.
          Length = 293

 Score = 30.7 bits (66), Expect = 0.51
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 286 QCQSIRH*KHAKYSSSSELQHCRCRSGLHVQRSHWC 393
           QCQ  +    AKY      Q+C+  +  H Q+  WC
Sbjct: 25  QCQKCQK-NEAKYGKPGTCQYCKLNAAFHDQKCVWC 59


>Z78542-5|CAB01748.1|  915|Caenorhabditis elegans Hypothetical
           protein F20D1.6 protein.
          Length = 915

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +2

Query: 368 YMFKDHIGASATAAHTDV 421
           Y+FK+H+GAS +A H +V
Sbjct: 215 YLFKEHLGASISAFHEEV 232


>U55376-1|AAA98003.1|  434|Caenorhabditis elegans Hypothetical
           protein F16H11.3 protein.
          Length = 434

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 117 EPRALSLWFSLPVMGTLTIAPEVPSELI 34
           +P  +  W+S   MG+LTIA ++P+  I
Sbjct: 57  KPDGVETWYSKEFMGSLTIASQLPNASI 84


>AF016425-1|AAD34668.1|  458|Caenorhabditis elegans Hypothetical
           protein F59A7.1 protein.
          Length = 458

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
 Frame = +2

Query: 209 THIP----GFGDKMTAAGKVNLFHNNN 277
           +H+P    GFGDK T +  +  F+NNN
Sbjct: 237 SHLPDPRLGFGDKTTGSDSLQKFYNNN 263


>Z82267-3|CAB05191.1|  186|Caenorhabditis elegans Hypothetical
           protein F38C2.5 protein.
          Length = 186

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 317 PNIPQVPNFNTVGAGVDYMFKDHIGASATAAHTD 418
           P +PQ  ++    +G+   F D+ GASA+++ TD
Sbjct: 151 PLMPQFSSWFAPSSGLSREFLDNFGASASSSSTD 184


>Z49132-7|CAA88986.1|  403|Caenorhabditis elegans Hypothetical
           protein ZK666.7 protein.
          Length = 403

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +2

Query: 125 LTNQMKLGAATAGLAY--DNVNGHGATLTKTHIPGF 226
           L  +MK+  A A +AY  DNVNG    L++   PG+
Sbjct: 180 LATRMKVDVAIATVAYGQDNVNGFLRQLSQIATPGY 215


>U41995-11|AAA83467.1|  665|Caenorhabditis elegans Hypothetical
           protein E02C12.10 protein.
          Length = 665

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +2

Query: 221 GFG-DKMTAAGKVNL-FHNNNHDFSAKAFATKNMPNIP 328
           GFG DK+   GK    FHN   D S K     N PNIP
Sbjct: 514 GFGEDKLKRLGKTTREFHNREVD-SYKLLMRYNHPNIP 550


>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
            F40H6.5 protein.
          Length = 1288

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 366  TTCSKITLVHLRPPHTPMSLTATTT 440
            +T   +++  +RPP TP + T+TTT
Sbjct: 1140 STIDTVSMACVRPPTTPTTTTSTTT 1164


>AC024856-1|ABB51172.1|  334|Caenorhabditis elegans Hypothetical
           protein Y71G10AR.4 protein.
          Length = 334

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = -1

Query: 138 IWLVRSTEPRALSLWFSLPVMGTLTIA 58
           +W+VRS E R L+++F + V+  +++A
Sbjct: 169 VWVVRSKESRRLTVYFVISVVVLISMA 195


>Z92789-6|CAB07218.2|  303|Caenorhabditis elegans Hypothetical
           protein H02I12.4 protein.
          Length = 303

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 318 QIFLKFRTSTLSVPEWTTCSKITLVHLRPPH-TPMSLTATT 437
           ++ +K+   TL   +   CS    VHLR PH  P ++  +T
Sbjct: 2   KLIIKYTVLTLFYAQLINCSGYLEVHLRSPHEQPATVNIST 42


>Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical
           protein F13E6.6 protein.
          Length = 1340

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 355 TDSVEVRNLRNIWHVFSGECFGTEIVVVVMEEIYFTGSRHFVTEPRDMS 209
           T+   VRNL+ ++HVF      ++IV   +  + F      +   + MS
Sbjct: 753 TERTHVRNLKILYHVFYKPIVTSKIVTEELANLLFANLEELLNLHKSMS 801


>Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical
           protein F13E6.6 protein.
          Length = 1340

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 355 TDSVEVRNLRNIWHVFSGECFGTEIVVVVMEEIYFTGSRHFVTEPRDMS 209
           T+   VRNL+ ++HVF      ++IV   +  + F      +   + MS
Sbjct: 753 TERTHVRNLKILYHVFYKPIVTSKIVTEELANLLFANLEELLNLHKSMS 801


>U46671-5|AAA85750.2|  147|Caenorhabditis elegans Hypothetical
           protein C14E2.5 protein.
          Length = 147

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 18/75 (24%), Positives = 29/75 (38%)
 Frame = +2

Query: 203 TKTHIPGFGDKMTAAGKVNLFHNNNHDFSAKAFATKNMPNIPQVPNFNTVGAGVDYMFKD 382
           T   IP F   + A  K  LF   N D   +   +    N   + NF +  +   Y  +D
Sbjct: 10  TAMEIPTFARALNAEPKSQLFLKENQDSQPRLLVSTAEKNGSVISNFKS--SWNHYYIED 67

Query: 383 HIGASATAAHTDVFN 427
           +  +    + T VF+
Sbjct: 68  NSSSDENISQTTVFD 82


>AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.
          Length = 1293

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 355 TDSVEVRNLRNIWHVFSGECFGTEIVVVVMEEIYFTGSRHFVTEPRDMS 209
           T+   VRNL+ ++HVF      ++IV   +  + F      +   + MS
Sbjct: 706 TERTHVRNLKILYHVFYKPIVTSKIVTEELANLLFANLEELLNLHKSMS 754


>AF040649-7|AAB95002.1|  295|Caenorhabditis elegans Hypothetical
           protein F33H12.1 protein.
          Length = 295

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 391 TNVIFEHVVHSGTDSVEVRNLRNIWHVFSGECF 293
           T + FE+  H  T S+ +R +   W V S   F
Sbjct: 27  TGIQFENKTHYDTKSIPMRRIETTWLVISNSDF 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,266,824
Number of Sequences: 27780
Number of extensions: 239997
Number of successful extensions: 629
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)