Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_D12
(450 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g42940.1 68416.m04509 expressed protein 28 3.4
At1g76070.1 68414.m08834 expressed protein 27 4.4
At5g64360.3 68418.m08085 DNAJ heat shock N-terminal domain-conta... 27 5.9
At5g64360.2 68418.m08084 DNAJ heat shock N-terminal domain-conta... 27 5.9
At5g64360.1 68418.m08083 DNAJ heat shock N-terminal domain-conta... 27 5.9
At3g57030.1 68416.m06348 strictosidine synthase family protein s... 27 5.9
At3g44820.1 68416.m04829 phototropic-responsive NPH3 family prot... 27 5.9
At5g55530.3 68418.m06918 C2 domain-containing protein low simila... 27 7.7
At5g55530.2 68418.m06917 C2 domain-containing protein low simila... 27 7.7
At5g55530.1 68418.m06916 C2 domain-containing protein low simila... 27 7.7
At3g42100.1 68416.m04322 AT hook motif-containing protein-relate... 27 7.7
At2g43250.1 68415.m05375 expressed protein and genefinder 27 7.7
>At3g42940.1 68416.m04509 expressed protein
Length = 193
Score = 27.9 bits (59), Expect = 3.4
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = -3
Query: 385 VIFEHVVHSGTDSVEVRNLRNIWHVFSGEC 296
+ E ++ SG D ++ + N WH+F C
Sbjct: 157 ICLEDMLESGFDDKQIYRMHNCWHMFYEGC 186
>At1g76070.1 68414.m08834 expressed protein
Length = 272
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 257 NLFHNNNHDFSAKAFATKNMPNIPQVPN 340
+L HNN+H+++A + P +P VPN
Sbjct: 40 DLHHNNHHNYTAANKMFFSGPMVPLVPN 67
>At5g64360.3 68418.m08085 DNAJ heat shock N-terminal
domain-containing protein low similarity to AHM1
[Triticum aestivum] GI:6691467; contains Pfam profile
PF00226 DnaJ domain
Length = 464
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = -1
Query: 123 STEPRALSLWFSLPVMGTLTIAPEVPSELIVRAPACRRTLE 1
S +P A S W + P L P+ E ++ CRR +
Sbjct: 187 SADPMATSFWTACPYCFVLFEYPKAYEECTLKCQECRRAFQ 227
>At5g64360.2 68418.m08084 DNAJ heat shock N-terminal
domain-containing protein low similarity to AHM1
[Triticum aestivum] GI:6691467; contains Pfam profile
PF00226 DnaJ domain
Length = 464
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = -1
Query: 123 STEPRALSLWFSLPVMGTLTIAPEVPSELIVRAPACRRTLE 1
S +P A S W + P L P+ E ++ CRR +
Sbjct: 187 SADPMATSFWTACPYCFVLFEYPKAYEECTLKCQECRRAFQ 227
>At5g64360.1 68418.m08083 DNAJ heat shock N-terminal
domain-containing protein low similarity to AHM1
[Triticum aestivum] GI:6691467; contains Pfam profile
PF00226 DnaJ domain
Length = 422
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = -1
Query: 123 STEPRALSLWFSLPVMGTLTIAPEVPSELIVRAPACRRTLE 1
S +P A S W + P L P+ E ++ CRR +
Sbjct: 187 SADPMATSFWTACPYCFVLFEYPKAYEECTLKCQECRRAFQ 227
>At3g57030.1 68416.m06348 strictosidine synthase family protein
similar to strictosidine synthase [Rauvolfia
serpentina][SP|P15324]
Length = 374
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 144 NFIWLVRSTEPRALSLWFSLPVMGTLTIAPEVP 46
+F+ +V +T + L LW S P GT + E+P
Sbjct: 231 SFVLVVETTTCKILRLWLSGPNAGTHQVFAELP 263
>At3g44820.1 68416.m04829 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 661
Score = 27.1 bits (57), Expect = 5.9
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +2
Query: 116 SVDLTNQMKLGAATAGLAYDNVNGHGATLTKTHIPGFGDKMTAAGKVNLFHNNNHDFS-A 292
SVDL ++ T G+ +++ G + ++PG G + + F+ A
Sbjct: 264 SVDLFKRLIKTMETKGIRAESLAGAMMYYARKYLPGLGRWQSGTSDSSKSRRRVVSFNLA 323
Query: 293 KAFATKNMPNIPQVPNFNTV 352
KA + +MP + Q+ T+
Sbjct: 324 KASSPSSMPPLDQIALLETI 343
>At5g55530.3 68418.m06918 C2 domain-containing protein low
similarity to cold-regulated gene SRC2 [Glycine max]
GI:2055230; contains Pfam profile PF00168: C2 domain
Length = 405
Score = 26.6 bits (56), Expect = 7.7
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +2
Query: 32 TINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTKT 211
TI+S+ TS ++V + ENH +++ S+ + + AT G A + + H AT T
Sbjct: 242 TIDSE-TSDSLVT---SDAENHVTNSVTSILKQDSPESSNATNGAASPHASAHSATETPN 297
Query: 212 H 214
H
Sbjct: 298 H 298
>At5g55530.2 68418.m06917 C2 domain-containing protein low
similarity to cold-regulated gene SRC2 [Glycine max]
GI:2055230; contains Pfam profile PF00168: C2 domain
Length = 405
Score = 26.6 bits (56), Expect = 7.7
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +2
Query: 32 TINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTKT 211
TI+S+ TS ++V + ENH +++ S+ + + AT G A + + H AT T
Sbjct: 242 TIDSE-TSDSLVT---SDAENHVTNSVTSILKQDSPESSNATNGAASPHASAHSATETPN 297
Query: 212 H 214
H
Sbjct: 298 H 298
>At5g55530.1 68418.m06916 C2 domain-containing protein low
similarity to cold-regulated gene SRC2 [Glycine max]
GI:2055230; contains Pfam profile PF00168: C2 domain
Length = 405
Score = 26.6 bits (56), Expect = 7.7
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +2
Query: 32 TINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTKT 211
TI+S+ TS ++V + ENH +++ S+ + + AT G A + + H AT T
Sbjct: 242 TIDSE-TSDSLVT---SDAENHVTNSVTSILKQDSPESSNATNGAASPHASAHSATETPN 297
Query: 212 H 214
H
Sbjct: 298 H 298
>At3g42100.1 68416.m04322 AT hook motif-containing protein-related
very low similarity to SP|Q9UUA2 DNA repair and
recombination protein pif1, mitochondrial precursor
{Schizosaccharomyces pombe}; weak hit to Pfam profile
PF02178: AT hook motif
Length = 1752
Score = 26.6 bits (56), Expect = 7.7
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = +2
Query: 122 DLTNQMKLGAATAG--LAYDNVNGHGATLTKTHIPGFGDKMTAAGKVNLFHNNNHDFSAK 295
D+TN LG ++ G L N N + KTH G + + + N+ H ++
Sbjct: 58 DITN---LGYSSVGSFLTPSN-NQQSYSAKKTHSTNIGSTVVSGLASMVQANSRHMKQSQ 113
Query: 296 AFATKNMPNIPQVPNFNTVGAG 361
A K+M N+P + + G G
Sbjct: 114 AVVFKDMTNLPSMGLSSATGKG 135
>At2g43250.1 68415.m05375 expressed protein and genefinder
Length = 625
Score = 26.6 bits (56), Expect = 7.7
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = +2
Query: 248 GKVNLFHNNNHDFSAKAFATKNMPNIPQVPNFNTVGAGVDYMFKDHIGASATAAHT 415
G +NLF + H AF +P+ P F + GA + K + A A T
Sbjct: 460 GSLNLFLTHTHKAVTFAFTKVAVPSKAMAPGFASSGAKSTSLVKASLSAEKIRAVT 515
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,659,655
Number of Sequences: 28952
Number of extensions: 223633
Number of successful extensions: 523
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -