Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_D11
(576 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK131302-1|BAD18470.1| 626|Homo sapiens protein ( Homo sapiens ... 58 3e-08
AK128824-1|BAC87625.1| 706|Homo sapiens protein ( Homo sapiens ... 30 5.1
BC105111-1|AAI05112.1| 884|Homo sapiens protocadherin alpha sub... 29 8.9
BC104776-1|AAI04777.1| 884|Homo sapiens protocadherin alpha sub... 29 8.9
BC063288-1|AAH63288.1| 1007|Homo sapiens protocadherin alpha sub... 29 8.9
AF152474-1|AAD43735.1| 884|Homo sapiens protocadherin alpha C2 ... 29 8.9
AF152304-1|AAD43698.1| 1007|Homo sapiens protocadherin alpha C2 ... 29 8.9
>AK131302-1|BAD18470.1| 626|Homo sapiens protein ( Homo sapiens
cDNA FLJ16275 fis, clone NT2RI2027157, moderately
similar to Mouse SDR2 mRNA. ).
Length = 626
Score = 57.6 bits (133), Expect = 3e-08
Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 5/136 (3%)
Frame = +1
Query: 97 PTGAPPSACFDMIPGHAADVQTVPAPYTITTAVSSVKAGHSIDVVISGKTPEDKMAGILL 276
P G +C MIP H Q+VP + I + + + G I+V +SG G LL
Sbjct: 24 PNGKVTQSCHGMIPEHGHSPQSVPV-HDIYVSQMTFRPGDQIEVTLSG----HPFKGFLL 78
Query: 277 EARQGDKI----VGTWTVSPDDTFSQPLNCGE-PNNAVTHKMHAKELDRQTVSYPWTAPK 441
EAR + + +G++T+ D SQ L C + +AV+H+ +K+ + + W AP
Sbjct: 79 EARNAEDLNGPPIGSFTLI-DSEVSQLLTCEDIQGSAVSHRSASKKTE---IKVYWNAPS 134
Query: 442 DLEGDVVFKVTIVKSY 489
F VT+V+ Y
Sbjct: 135 SAPNHTQFLVTVVEKY 150
>AK128824-1|BAC87625.1| 706|Homo sapiens protein ( Homo sapiens
cDNA FLJ46160 fis, clone TESTI4002141. ).
Length = 706
Score = 30.3 bits (65), Expect = 5.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 319 LRSKCRRSCHPDELPGGCRPFCLRVFC 239
LR+ C P + GGC C+RV C
Sbjct: 241 LRASVSECCVPGDAQGGCAGICVRVLC 267
>BC105111-1|AAI05112.1| 884|Homo sapiens protocadherin alpha
subfamily C, 2, isoform 2 precursor protein.
Length = 884
Score = 29.5 bits (63), Expect = 8.9
Identities = 19/78 (24%), Positives = 33/78 (42%)
Frame = +1
Query: 289 GDKIVGTWTVSPDDTFSQPLNCGEPNNAVTHKMHAKELDRQTVSYPWTAPKDLEGDVVFK 468
G V T+ +SP + F L + N+ V + K LDR+ + ++G + +
Sbjct: 178 GANSVQTYELSPSEHFELDLKPLQENSKVLELVLRKGLDREQAALHHLVLTAVDGGIPAR 237
Query: 469 VTIVKSYARLLGRNSNQP 522
+ R+L N N P
Sbjct: 238 SGTAQISVRVLDTNDNSP 255
>BC104776-1|AAI04777.1| 884|Homo sapiens protocadherin alpha
subfamily C, 2, isoform 2 precursor protein.
Length = 884
Score = 29.5 bits (63), Expect = 8.9
Identities = 19/78 (24%), Positives = 33/78 (42%)
Frame = +1
Query: 289 GDKIVGTWTVSPDDTFSQPLNCGEPNNAVTHKMHAKELDRQTVSYPWTAPKDLEGDVVFK 468
G V T+ +SP + F L + N+ V + K LDR+ + ++G + +
Sbjct: 178 GANSVQTYELSPSEHFELDLKPLQENSKVLELVLRKGLDREQAALHHLVLTAVDGGIPAR 237
Query: 469 VTIVKSYARLLGRNSNQP 522
+ R+L N N P
Sbjct: 238 SGTAQISVRVLDTNDNSP 255
>BC063288-1|AAH63288.1| 1007|Homo sapiens protocadherin alpha
subfamily C, 2 protein.
Length = 1007
Score = 29.5 bits (63), Expect = 8.9
Identities = 19/78 (24%), Positives = 33/78 (42%)
Frame = +1
Query: 289 GDKIVGTWTVSPDDTFSQPLNCGEPNNAVTHKMHAKELDRQTVSYPWTAPKDLEGDVVFK 468
G V T+ +SP + F L + N+ V + K LDR+ + ++G + +
Sbjct: 178 GANSVQTYELSPSEHFELDLKPLQENSKVLELVLRKGLDREQAALHHLVLTAVDGGIPAR 237
Query: 469 VTIVKSYARLLGRNSNQP 522
+ R+L N N P
Sbjct: 238 SGTAQISVRVLDTNDNSP 255
>AF152474-1|AAD43735.1| 884|Homo sapiens protocadherin alpha C2
short form protein protein.
Length = 884
Score = 29.5 bits (63), Expect = 8.9
Identities = 19/78 (24%), Positives = 33/78 (42%)
Frame = +1
Query: 289 GDKIVGTWTVSPDDTFSQPLNCGEPNNAVTHKMHAKELDRQTVSYPWTAPKDLEGDVVFK 468
G V T+ +SP + F L + N+ V + K LDR+ + ++G + +
Sbjct: 178 GANSVQTYELSPSEHFELDLKPLQENSKVLELVLRKGLDREQAALHHLVLTAVDGGIPAR 237
Query: 469 VTIVKSYARLLGRNSNQP 522
+ R+L N N P
Sbjct: 238 SGTAQISVRVLDTNDNSP 255
>AF152304-1|AAD43698.1| 1007|Homo sapiens protocadherin alpha C2
protein.
Length = 1007
Score = 29.5 bits (63), Expect = 8.9
Identities = 19/78 (24%), Positives = 33/78 (42%)
Frame = +1
Query: 289 GDKIVGTWTVSPDDTFSQPLNCGEPNNAVTHKMHAKELDRQTVSYPWTAPKDLEGDVVFK 468
G V T+ +SP + F L + N+ V + K LDR+ + ++G + +
Sbjct: 178 GANSVQTYELSPSEHFELDLKPLQENSKVLELVLRKGLDREQAALHHLVLTAVDGGIPAR 237
Query: 469 VTIVKSYARLLGRNSNQP 522
+ R+L N N P
Sbjct: 238 SGTAQISVRVLDTNDNSP 255
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,837,984
Number of Sequences: 237096
Number of extensions: 2230272
Number of successful extensions: 5556
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5555
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5929224630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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