Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_D10
         (350 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein L30|Sc...    44   7e-06
SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Sc...    41   6e-05
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac...    25   3.4  
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce...    24   6.0  
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi...    24   6.0  

>SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 44.0 bits (99), Expect = 7e-06
 Identities = 23/43 (53%), Positives = 28/43 (65%)
 Frame = +1

Query: 91  GNAPPLRKSEIEYYALP*PKQGVHHYEWKTIIELGYCLRKILQ 219
           GN PPLRKSE+EYYA+   K  VHHY   T I+LG    K+ +
Sbjct: 52  GNCPPLRKSELEYYAML-SKANVHHYA-GTNIDLGTACGKLFR 92



 Score = 41.5 bits (93), Expect = 4e-05
 Identities = 18/24 (75%), Positives = 20/24 (83%)
 Frame = +2

Query: 194 GTACGKYYRVCTLAITDPGDSDII 265
           GTACGK +RV  LAITD GDSDI+
Sbjct: 84  GTACGKLFRVGVLAITDAGDSDIL 107


>SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 40.7 bits (91), Expect = 6e-05
 Identities = 21/42 (50%), Positives = 27/42 (64%)
 Frame = +1

Query: 94  NAPPLRKSEIEYYALP*PKQGVHHYEWKTIIELGYCLRKILQ 219
           NAPPLRKSE+EYYA+   +  VHHY     I+LG    K+ +
Sbjct: 61  NAPPLRKSELEYYAML-SRCSVHHYSGNN-IDLGTACGKLFR 100



 Score = 38.7 bits (86), Expect = 3e-04
 Identities = 16/24 (66%), Positives = 19/24 (79%)
 Frame = +2

Query: 194 GTACGKYYRVCTLAITDPGDSDII 265
           GTACGK +RV  LA+ D GDSDI+
Sbjct: 92  GTACGKLFRVGVLAVIDAGDSDIL 115


>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 483

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 102 SSEEVGDRILCSPLAK 149
           S EE GDR+  SPLA+
Sbjct: 178 SGEERGDRVFASPLAR 193


>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 663

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +3

Query: 51  VASGNVAKLVIIARECASSEEVGDRILCSPLAKTGCPP 164
           V+S  ++ +V        +  +G+++  SPL K   PP
Sbjct: 415 VSSSELSSIVSSTGSIVETNGIGEKMSFSPLKKLSIPP 452


>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
           Gap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 766

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 175 KTIIELGYCLRKILQSMYSSN 237
           K ++E+  CL  +LQ  Y+SN
Sbjct: 720 KVLVEVCICLDDVLQRRYASN 740


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,139,136
Number of Sequences: 5004
Number of extensions: 20077
Number of successful extensions: 58
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)