Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_D10
(350 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0300 + 23932947-23933196,23934022-23934123,23934249-239343... 56 1e-08
01_06_1103 - 34543915-34543955,34544069-34544137,34544294-345443... 55 1e-08
01_01_1199 - 9657169-9657254,9657369-9657395,9657485-9657553,965... 51 2e-07
03_05_1133 - 30614901-30615389,30615823-30615933,30616113-306161... 29 1.4
06_01_0179 - 1388602-1389572,1390060-1390129,1390346-1390439,139... 28 2.4
05_04_0374 - 20736615-20737037,20737148-20737639,20738145-207384... 27 3.1
03_06_0358 + 33366265-33366447,33367371-33367468,33367910-333689... 27 3.1
04_03_0818 + 20014685-20014687,20014792-20014831,20014988-200150... 27 4.1
01_03_0049 + 11957536-11958078 27 5.5
06_03_0642 + 23084397-23084909,23084990-23085123,23085618-230857... 26 7.2
05_04_0174 - 18728199-18731411 26 7.2
12_01_0670 + 5698852-5699061,5700894-5701316 26 9.6
01_01_0406 + 3059996-3060047,3060804-3060867,3060979-3061054,306... 26 9.6
>05_05_0300 +
23932947-23933196,23934022-23934123,23934249-23934317,
23934406-23934446
Length = 153
Score = 55.6 bits (128), Expect = 1e-08
Identities = 23/28 (82%), Positives = 24/28 (85%)
Frame = +2
Query: 194 GTACGKYYRVCTLAITDPGDSDIITTLP 277
GTACGKYYRVC L+I DPGDSDII T P
Sbjct: 123 GTACGKYYRVCCLSIIDPGDSDIINTTP 150
Score = 37.9 bits (84), Expect = 0.002
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = +1
Query: 94 NAPPLRKSEIEYYALP*PKQGVHHYEWKTIIELG 195
N PPLRKSEIEYYA+ K VHH+ ++LG
Sbjct: 92 NCPPLRKSEIEYYAML-GKVSVHHFHGNN-VDLG 123
>01_06_1103 -
34543915-34543955,34544069-34544137,34544294-34544395,
34545603-34545708,34545998-34546079,34546850-34547142
Length = 230
Score = 55.2 bits (127), Expect = 1e-08
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = +2
Query: 194 GTACGKYYRVCTLAITDPGDSDIITTLPEA 283
GTACGKYYRVC L++ DPGDSDI LPE+
Sbjct: 200 GTACGKYYRVCCLSVVDPGDSDITKQLPES 229
Score = 35.5 bits (78), Expect = 0.012
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +1
Query: 94 NAPPLRKSEIEYYALP*PKQGVHHYEWKTIIELG 195
N PPLRKSEIEYYA+ K V+H+ ++LG
Sbjct: 169 NCPPLRKSEIEYYAML-GKVSVYHFNGNN-VDLG 200
>01_01_1199 -
9657169-9657254,9657369-9657395,9657485-9657553,
9657922-9658023,9659895-9660000,9660145-9660165
Length = 136
Score = 51.2 bits (117), Expect = 2e-07
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = +2
Query: 194 GTACGKYYRVCTLAITDPGDSDIITT 271
GTACGKY+RVC L+I DPGDSDII T
Sbjct: 82 GTACGKYFRVCCLSIIDPGDSDIIKT 107
Score = 37.5 bits (83), Expect = 0.003
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = +1
Query: 94 NAPPLRKSEIEYYALP*PKQGVHHYEWKTIIELG 195
N PPLRKSEIEYYA+ K VHH+ ++LG
Sbjct: 51 NCPPLRKSEIEYYAML-AKVTVHHFHGNN-VDLG 82
>03_05_1133 -
30614901-30615389,30615823-30615933,30616113-30616178,
30616347-30616406,30616493-30616801,30616960-30617108,
30617200-30617269,30617370-30617494,30617516-30617573,
30618176-30618370,30618585-30618857,30618950-30619120,
30619203-30619333,30619423-30619582,30619712-30619900,
30620023-30620118,30620381-30620611,30620715-30620853,
30620903-30621057,30621160-30621378
Length = 1131
Score = 28.7 bits (61), Expect = 1.4
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -1
Query: 245 GL*LLEYILCNIFRKQYPSSIIVFHS*W 162
G L+E +LC+I RK+ +++VF + W
Sbjct: 525 GFNLIEAVLCHICRKERSGAVLVFMTGW 552
>06_01_0179 -
1388602-1389572,1390060-1390129,1390346-1390439,
1390587-1390687,1391152-1391220,1391328-1391482,
1392193-1392241,1392611-1392739,1392825-1393580,
1394711-1394902
Length = 861
Score = 27.9 bits (59), Expect = 2.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 175 KTIIELGYCLRKILQSMYSSNHRP 246
+T +E G C R++ Q +Y HRP
Sbjct: 292 RTPVENGLCSRRLKQYLYHKRHRP 315
>05_04_0374 -
20736615-20737037,20737148-20737639,20738145-20738422,
20738576-20738732
Length = 449
Score = 27.5 bits (58), Expect = 3.1
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 160 GHPVLAKGEHNILSPTSSEEAHSLAMITN 74
G+PV GEH+ L P S EAH+ + TN
Sbjct: 304 GNPV---GEHSGLPPMSEAEAHAFEVSTN 329
>03_06_0358 +
33366265-33366447,33367371-33367468,33367910-33368945,
33369042-33369554,33370456-33370644,33370715-33370848,
33371196-33371358
Length = 771
Score = 27.5 bits (58), Expect = 3.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 172 TRSGGHPVLAKGEHNILSPTSSEEAHSLAMI 80
+R G+P A G+ + SPT+S A S++ +
Sbjct: 735 SRISGNPRTANGDREVNSPTASVSAQSISSV 765
>04_03_0818 +
20014685-20014687,20014792-20014831,20014988-20015025,
20015359-20015485,20015571-20015797,20015919-20016064,
20016166-20016284,20016711-20016799,20016881-20017003,
20017123-20017158,20017464-20017562,20017642-20017833
Length = 412
Score = 27.1 bits (57), Expect = 4.1
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = -3
Query: 198 VPELNYCFPLV---VVDTLFWLRESIIF 124
VP +++ P V ++D L WLRESI F
Sbjct: 157 VPNIDHTQPFVRKDIIDWLIWLRESIGF 184
>01_03_0049 + 11957536-11958078
Length = 180
Score = 26.6 bits (56), Expect = 5.5
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 96 CASSEEVGDRILCSPLAK-TGCPPLRVENNN 185
CA+ + VGD L +P K TG PL V +++
Sbjct: 88 CAADDPVGDGALLAPANKPTGADPLAVASSS 118
>06_03_0642 +
23084397-23084909,23084990-23085123,23085618-23085731,
23085929-23086112,23086212-23086280,23087319-23087576
Length = 423
Score = 26.2 bits (55), Expect = 7.2
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 229 STYSVIFSASSTRAQLLFSTRSGGHPVLAKGEHNILSPTSSEEA 98
S+ + A TR +GG LA EH+ +S +SS A
Sbjct: 43 SSSAAALRAGKTRTHAAIPKVNGGSSALADPEHDTMSSSSSSAA 86
>05_04_0174 - 18728199-18731411
Length = 1070
Score = 26.2 bits (55), Expect = 7.2
Identities = 12/27 (44%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = +3
Query: 54 ASGNVAKLVI-IARECASSEEVGDRIL 131
+ G VA+LV+ +ARECAS+ ++ R++
Sbjct: 24 SQGLVARLVVRLARECASAGDLAARLV 50
>12_01_0670 + 5698852-5699061,5700894-5701316
Length = 210
Score = 25.8 bits (54), Expect = 9.6
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = -2
Query: 253 IARVCDC*STYSVIFSASSTRAQLLFSTRSGGHPVLAKGEHNILSPTSSEEAHSLAMITN 74
+ R CD + ++ A++ R L+ R GG A I+SPTSS A + + +N
Sbjct: 85 LCRSCDV-AVHTATAHAAAHRRFLITGVRIGGSVDAAAAADVIVSPTSSSIAPAGSASSN 143
Query: 73 LA 68
A
Sbjct: 144 HA 145
>01_01_0406 +
3059996-3060047,3060804-3060867,3060979-3061054,
3061142-3061243,3061327-3061542,3061615-3061695,
3062219-3062287,3062789-3062961,3063098-3063182,
3063290-3063491,3063577-3063646,3063956-3064025,
3064138-3064227,3064321-3064389,3064566-3064664,
3064814-3064924
Length = 542
Score = 25.8 bits (54), Expect = 9.6
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -2
Query: 304 NLLNLSCCLRQCCYDVRIARVCDC*STYSVIFSASSTRAQLLFS 173
+L+ + + Q C D++ R+CD + S+ FS T Q++ S
Sbjct: 467 HLIQFTEVVEQACADLQPHRLCDYLYSLSLTFSKFYTNCQVVGS 510
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,611,606
Number of Sequences: 37544
Number of extensions: 137326
Number of successful extensions: 363
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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