Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_D10
(350 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X79238-1|CAA55820.1| 115|Homo sapiens ribosomal protein L30 pro... 62 5e-10
L05095-1|AAC15858.1| 115|Homo sapiens ribosomal protein L30 pro... 62 5e-10
BC095426-1|AAH95426.1| 115|Homo sapiens ribosomal protein L30 p... 62 5e-10
BC032700-1|AAH32700.1| 115|Homo sapiens ribosomal protein L30 p... 62 5e-10
AB070559-1|BAB79491.1| 115|Homo sapiens ribosomal protein L30 p... 62 5e-10
BC098425-1|AAH98425.1| 377|Homo sapiens T protein protein. 28 7.2
AL627443-2|CAI14269.1| 435|Homo sapiens T, brachyury homolog (m... 28 7.2
AJ001699-1|CAA04938.1| 435|Homo sapiens Brachyury (T) protein p... 28 7.2
>X79238-1|CAA55820.1| 115|Homo sapiens ribosomal protein L30
protein.
Length = 115
Score = 62.1 bits (144), Expect = 5e-10
Identities = 26/31 (83%), Positives = 28/31 (90%)
Frame = +2
Query: 194 GTACGKYYRVCTLAITDPGDSDIITTLPEAT 286
GTACGKYYRVCTLAI DPGDSDII ++PE T
Sbjct: 82 GTACGKYYRVCTLAIIDPGDSDIIRSMPEQT 112
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/34 (64%), Positives = 23/34 (67%)
Frame = +1
Query: 94 NAPPLRKSEIEYYALP*PKQGVHHYEWKTIIELG 195
N P LRKSEIEYYA+ K GVHHY IELG
Sbjct: 51 NCPALRKSEIEYYAML-AKTGVHHYSGNN-IELG 82
>L05095-1|AAC15858.1| 115|Homo sapiens ribosomal protein L30
protein.
Length = 115
Score = 62.1 bits (144), Expect = 5e-10
Identities = 26/31 (83%), Positives = 28/31 (90%)
Frame = +2
Query: 194 GTACGKYYRVCTLAITDPGDSDIITTLPEAT 286
GTACGKYYRVCTLAI DPGDSDII ++PE T
Sbjct: 82 GTACGKYYRVCTLAIIDPGDSDIIRSMPEQT 112
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/34 (64%), Positives = 23/34 (67%)
Frame = +1
Query: 94 NAPPLRKSEIEYYALP*PKQGVHHYEWKTIIELG 195
N P LRKSEIEYYA+ K GVHHY IELG
Sbjct: 51 NCPALRKSEIEYYAML-AKTGVHHYSGNN-IELG 82
>BC095426-1|AAH95426.1| 115|Homo sapiens ribosomal protein L30
protein.
Length = 115
Score = 62.1 bits (144), Expect = 5e-10
Identities = 26/31 (83%), Positives = 28/31 (90%)
Frame = +2
Query: 194 GTACGKYYRVCTLAITDPGDSDIITTLPEAT 286
GTACGKYYRVCTLAI DPGDSDII ++PE T
Sbjct: 82 GTACGKYYRVCTLAIIDPGDSDIIRSMPEQT 112
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/34 (64%), Positives = 23/34 (67%)
Frame = +1
Query: 94 NAPPLRKSEIEYYALP*PKQGVHHYEWKTIIELG 195
N P LRKSEIEYYA+ K GVHHY IELG
Sbjct: 51 NCPALRKSEIEYYAML-AKTGVHHYSGNN-IELG 82
>BC032700-1|AAH32700.1| 115|Homo sapiens ribosomal protein L30
protein.
Length = 115
Score = 62.1 bits (144), Expect = 5e-10
Identities = 26/31 (83%), Positives = 28/31 (90%)
Frame = +2
Query: 194 GTACGKYYRVCTLAITDPGDSDIITTLPEAT 286
GTACGKYYRVCTLAI DPGDSDII ++PE T
Sbjct: 82 GTACGKYYRVCTLAIIDPGDSDIIRSMPEQT 112
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/34 (64%), Positives = 23/34 (67%)
Frame = +1
Query: 94 NAPPLRKSEIEYYALP*PKQGVHHYEWKTIIELG 195
N P LRKSEIEYYA+ K GVHHY IELG
Sbjct: 51 NCPALRKSEIEYYAML-AKTGVHHYSGNN-IELG 82
>AB070559-1|BAB79491.1| 115|Homo sapiens ribosomal protein L30
protein.
Length = 115
Score = 62.1 bits (144), Expect = 5e-10
Identities = 26/31 (83%), Positives = 28/31 (90%)
Frame = +2
Query: 194 GTACGKYYRVCTLAITDPGDSDIITTLPEAT 286
GTACGKYYRVCTLAI DPGDSDII ++PE T
Sbjct: 82 GTACGKYYRVCTLAIIDPGDSDIIRSMPEQT 112
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/34 (64%), Positives = 23/34 (67%)
Frame = +1
Query: 94 NAPPLRKSEIEYYALP*PKQGVHHYEWKTIIELG 195
N P LRKSEIEYYA+ K GVHHY IELG
Sbjct: 51 NCPALRKSEIEYYAML-AKTGVHHYSGNN-IELG 82
>BC098425-1|AAH98425.1| 377|Homo sapiens T protein protein.
Length = 377
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 157 HPVLAKGEHNILSPTSSEEAHSLAMITNLATLPEATA 47
HP + HN PTSS + SL ++N A P + A
Sbjct: 270 HPSMLPVSHNASPPTSSSQYPSLWSVSNGAVTPGSQA 306
>AL627443-2|CAI14269.1| 435|Homo sapiens T, brachyury homolog
(mouse) protein.
Length = 435
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 157 HPVLAKGEHNILSPTSSEEAHSLAMITNLATLPEATA 47
HP + HN PTSS + SL ++N A P + A
Sbjct: 328 HPSMLPVSHNASPPTSSSQYPSLWSVSNGAVTPGSQA 364
>AJ001699-1|CAA04938.1| 435|Homo sapiens Brachyury (T) protein
protein.
Length = 435
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 157 HPVLAKGEHNILSPTSSEEAHSLAMITNLATLPEATA 47
HP + HN PTSS + SL ++N A P + A
Sbjct: 328 HPSMLPVSHNASPPTSSSQYPSLWSVSNGAVTPGSQA 364
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,570,386
Number of Sequences: 237096
Number of extensions: 754188
Number of successful extensions: 1691
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1691
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2084089752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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