Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_D10
         (350 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032631-5|CAA21573.1|  113|Caenorhabditis elegans Hypothetical ...    52   9e-08
U50191-10|AAK31550.2| 1146|Caenorhabditis elegans Hypothetical p...    29   0.94 
U97550-2|AAK18979.1|  280|Caenorhabditis elegans Hypothetical pr...    27   3.8  
U40029-7|AAA81127.1|  645|Caenorhabditis elegans Yeast scc (mito...    26   6.6  

>AL032631-5|CAA21573.1|  113|Caenorhabditis elegans Hypothetical
           protein Y106G6H.3 protein.
          Length = 113

 Score = 52.4 bits (120), Expect = 9e-08
 Identities = 21/32 (65%), Positives = 27/32 (84%)
 Frame = +2

Query: 194 GTACGKYYRVCTLAITDPGDSDIITTLPEATA 289
           GTACG+ +RVCTLA+TD GDSDII ++P  +A
Sbjct: 82  GTACGRLFRVCTLAVTDAGDSDIILSVPSESA 113



 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 23/34 (67%), Positives = 24/34 (70%)
 Frame = +1

Query: 94  NAPPLRKSEIEYYALP*PKQGVHHYEWKTIIELG 195
           N PPLRKSEIEYYA+   K GVHHY     IELG
Sbjct: 51  NTPPLRKSEIEYYAML-AKTGVHHYNGNN-IELG 82


>U50191-10|AAK31550.2| 1146|Caenorhabditis elegans Hypothetical
            protein T14B4.1 protein.
          Length = 1146

 Score = 29.1 bits (62), Expect = 0.94
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = +3

Query: 75   LVIIARECASSEEVGDRILCSPLAKTGCPPLRVENNN*ARVLLAENITEYV 227
            L +IAR   SS  V D IL     +TG PP     NN   ++   NIT  +
Sbjct: 871  LNLIARSSCSSSHVLDTILSEIAKRTGMPPEETIPNN--IIMEMNNITHQI 919


>U97550-2|AAK18979.1|  280|Caenorhabditis elegans Hypothetical
           protein T20F7.3 protein.
          Length = 280

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = -2

Query: 271 CCYDVRIARVCDC*STYSVIFSASSTRAQLLFSTRSGGHPVLAKGE-HNILSP 116
           CCY     +V             S     LLFS ++ GH +L K E H  +SP
Sbjct: 67  CCYIFSFGKVISLKKCTVCSDPMSMKTINLLFSNQASGHYLLMKDEAHAAVSP 119


>U40029-7|AAA81127.1|  645|Caenorhabditis elegans Yeast scc (mitotic
           condensin subunit)homolog protein 1 protein.
          Length = 645

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 220 SVIFSASSTRAQLLFSTRSGGH 155
           SVIFS   TR  L+F  + GG+
Sbjct: 217 SVIFSEGPTRPNLIFDNQEGGN 238


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,394,285
Number of Sequences: 27780
Number of extensions: 115901
Number of successful extensions: 302
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)