Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_D10
(350 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g18740.1 68416.m02379 60S ribosomal protein L30 (RPL30C) simi... 52 1e-07
At1g36240.1 68414.m04505 60S ribosomal protein L30 (RPL30A) simi... 50 3e-07
At1g77940.1 68414.m09083 60S ribosomal protein L30 (RPL30B) simi... 50 6e-07
At2g03500.1 68415.m00309 myb family transcription factor contain... 29 0.87
At1g64255.1 68414.m07280 SWIM zinc finger family protein contain... 28 1.5
At1g48650.1 68414.m05445 helicase domain-containing protein cont... 28 1.5
At1g18100.1 68414.m02244 mother of FT and TF1 protein (MFT) iden... 27 4.6
At1g66980.1 68414.m07616 protein kinase family protein / glycero... 26 6.1
>At3g18740.1 68416.m02379 60S ribosomal protein L30 (RPL30C) similar
to 60S RIBOSOMAL PROTEIN L30 GB:O49884 from [Lupinus
luteus]
Length = 112
Score = 52.0 bits (119), Expect = 1e-07
Identities = 22/28 (78%), Positives = 24/28 (85%)
Frame = +2
Query: 194 GTACGKYYRVCTLAITDPGDSDIITTLP 277
GTACGKY+RV L+I DPGDSDII TLP
Sbjct: 82 GTACGKYFRVSCLSIVDPGDSDIIKTLP 109
Score = 37.9 bits (84), Expect = 0.002
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = +1
Query: 94 NAPPLRKSEIEYYALP*PKQGVHHYEWKTIIELG 195
N PPLR+SEIEYYA+ K GVH Y ++LG
Sbjct: 51 NCPPLRRSEIEYYAML-AKVGVHRYNGNN-VDLG 82
>At1g36240.1 68414.m04505 60S ribosomal protein L30 (RPL30A) similar
to GI:6984132 from [Euphorbia esula]
Length = 112
Score = 50.4 bits (115), Expect = 3e-07
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +2
Query: 194 GTACGKYYRVCTLAITDPGDSDIITTLP 277
GTACGKY+RV L+I DPGDSDII +LP
Sbjct: 82 GTACGKYFRVSCLSIVDPGDSDIIKSLP 109
Score = 41.5 bits (93), Expect = 2e-04
Identities = 20/34 (58%), Positives = 25/34 (73%)
Frame = +1
Query: 94 NAPPLRKSEIEYYALP*PKQGVHHYEWKTIIELG 195
N PPLR+SEIEYYA+ K GVHHY + ++LG
Sbjct: 51 NCPPLRRSEIEYYAML-AKVGVHHYN-RNNVDLG 82
>At1g77940.1 68414.m09083 60S ribosomal protein L30 (RPL30B) similar
to ribosomal protein L30 GI:388034 from [Homo sapiens]
Length = 112
Score = 49.6 bits (113), Expect = 6e-07
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = +2
Query: 194 GTACGKYYRVCTLAITDPGDSDIITTLP 277
GTACGKY+RV L+I DPGDSDII ++P
Sbjct: 82 GTACGKYFRVSCLSIVDPGDSDIIKSIP 109
Score = 41.1 bits (92), Expect = 2e-04
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = +1
Query: 94 NAPPLRKSEIEYYALP*PKQGVHHYEWKTIIELG 195
N PPLR+SEIEYYA+ K GVHHY ++LG
Sbjct: 51 NCPPLRRSEIEYYAML-AKVGVHHYNGNN-VDLG 82
>At2g03500.1 68415.m00309 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 432
Score = 29.1 bits (62), Expect = 0.87
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 82 SSPGNAPPLRKSEIEYYALP*PKQGVHHYEWKT 180
++ G PP S E+Y P P Q +HH+ ++T
Sbjct: 339 NTAGPPPPHFCSSQEFYTTPPPPQPLHHHHFQT 371
>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
Pfam profile PF04434: SWIM zinc finger
Length = 750
Score = 28.3 bits (60), Expect = 1.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 210 FPQAVPELNYCFPLVVVDT 154
FPQ++ +C PL+VVDT
Sbjct: 372 FPQSIEGFQHCRPLIVVDT 390
>At1g48650.1 68414.m05445 helicase domain-containing protein
contains similarity to DEIH-box RNA/DNA helicase
[Arabidopsis thaliana] GI:5881579; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain, PF00035:
Double-stranded RNA binding motif
Length = 1197
Score = 28.3 bits (60), Expect = 1.5
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -1
Query: 245 GL*LLEYILCNIFRKQYPSSIIVFHS*W 162
G L+E +LC+I + + P +++VF + W
Sbjct: 561 GFNLIENVLCHIVKGERPGAVLVFMTGW 588
>At1g18100.1 68414.m02244 mother of FT and TF1 protein (MFT)
identical to SP|Q9XFK7 MOTHER of FT and TF1 protein
{Arabidopsis thaliana}; contains Pfam profile PF01161:
Phosphatidylethanolamine-binding protein
Length = 173
Score = 26.6 bits (56), Expect = 4.6
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 88 PGNAPPLRKSEIEYYALP*PKQGVHHY 168
PG P R EI Y P P G+H Y
Sbjct: 92 PGGTNPSRGKEILPYMEPRPPVGIHRY 118
>At1g66980.1 68414.m07616 protein kinase family protein /
glycerophosphoryl diester phosphodiesterase family
protein similar to leaf rust resistance kinase Lr10
GI:1680685 from [Triticum aestivum]; contains Pfam
profiles PF03009: Glycerophosphoryl diester
phosphodiesterase family, PF00069: Protein kinase domain
Length = 1109
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -2
Query: 178 FSTRSGGHP-VLAKGEHNILSPTSSEEAHSLAMITNLA 68
+ T SG P V+A+G + L P SS A+ AM+ ++A
Sbjct: 43 WQTLSGDAPLVIARGGFSGLFPDSSLAAYQFAMVVSVA 80
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,008,808
Number of Sequences: 28952
Number of extensions: 107407
Number of successful extensions: 296
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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