Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_D09
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo...    29   0.39 
SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit Tfa2...    27   2.1  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    26   2.8  
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    26   2.8  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    26   3.7  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    25   8.4  
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    25   8.4  

>SPBC29A3.11c |||mitochondrial carboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 29.1 bits (62), Expect = 0.39
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +3

Query: 126 GYPAMAV-VNAKKLKFSTLRGSFSETGINEFLRGLSFGRGQTAPVKGAEMPKITTTEPWD 302
           GYP  ++ V  +   F T+R  F     NE L+GL   RG T P+  A + +  +   +D
Sbjct: 35  GYPLDSIKVRQQTYNFPTIRSCFQNAVKNEGLKGLY--RGLTLPLISATLSRSVSFTVYD 92


>SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit
           Tfa2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 285

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 36  DKYKSKMWGWIWAEAAAQPTLEEALELGGFGYPAMAV 146
           D +  K +  +W E    PTL+ A ELG +G    +V
Sbjct: 207 DCHVDKEFQQVWHEIPIPPTLDLASELGKYGLKPTSV 243


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = -2

Query: 356 VDIGEVYVLFERQLAVVAVPGLRRGDLGHLGAFYRRSLASTER 228
           +D+ ++  L+   L V    G+ + ++G +GA   ++LA +ER
Sbjct: 367 IDVADIPSLYGTILYVSMSTGIVKSEIGDIGAQQWKTLAPSER 409


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +3

Query: 132 PAMAVVNAK-KLKFSTLRGSFSETGINEFLRGLSFGRGQTAPVKGAEMPKITTTEPW 299
           P  A  +A+  +  S   GS S+ G +    G   GR Q APV   E  + TT++ W
Sbjct: 238 PTKATPSAEPSMTASANAGSISQAGPD----GEYQGREQIAPVSDTEAARKTTSQSW 290


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -3

Query: 157 FALTTAMAG*PNPPSSKASSRVGCAAASAHIHPH 56
           F LT  +A  P PPS    S V     S+  +PH
Sbjct: 99  FELTNTLAASPAPPSLSEPSYVMARTPSSSPYPH 132


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 252 PVKGAEMPKITTTEPWDGNDGELPLEEDIDLS 347
           P+     PK++TT+        L  EEDI LS
Sbjct: 340 PIPRHTKPKLSTTQSTPVKPASLQSEEDIQLS 371


>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 455

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = +3

Query: 237 RGQTAPVKG--AEMPKITTTEPWD---GNDGELPLEEDIDLSDVDLEKD 368
           RG   PV+G  A   K +  E  D     DG++  EE I+L   D EK+
Sbjct: 332 RGHHKPVEGTTATSEKESIKEEVDLEVNGDGKVEAEERIELESSDSEKE 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,557,367
Number of Sequences: 5004
Number of extensions: 24912
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)