Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_D09
         (501 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0345 + 16876489-16876614,16876718-16876876,16877989-168781...    68   4e-12
01_01_1209 - 9738501-9738516,9738703-9739161,9739389-9739608,973...    30   0.91 
01_01_0274 - 2263304-2264211,2264490-2264673                           30   0.91 
06_01_0570 + 4026889-4027537,4028340-4028689,4029258-4029433,402...    28   4.8  
12_02_1160 + 26592537-26593046,26593588-26593635                       27   6.4  
09_02_0140 + 4879319-4879968,4881443-4881942,4884230-4884368,488...    27   6.4  

>09_04_0345 +
           16876489-16876614,16876718-16876876,16877989-16878102,
           16878701-16878882,16879142-16879241,16879597-16879638,
           16879818-16879994,16880084-16880175,16880633-16880779,
           16880832-16881036
          Length = 447

 Score = 68.1 bits (159), Expect = 4e-12
 Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 10/125 (8%)
 Frame = +3

Query: 9   YISILKRLGDKYKSKMWGWIWAEAAAQPTLEEALELGGFGYPAMAVVNAKKLKFSTLRGS 188
           ++S L  + D        ++W  A  Q  LE+ + +GG+GYPAM  +N KK  ++ LR +
Sbjct: 314 FVSFLPDILDSKAEGRNNFVWTAAGKQADLEKQVGVGGYGYPAMVALNVKKGAYAPLRSA 373

Query: 189 F----------SETGINEFLRGLSFGRGQTAPVKGAEMPKITTTEPWDGNDGELPLEEDI 338
           F               +EF++    G     P+ G   P I  +EPWDG DGE+  E++ 
Sbjct: 374 FQLDEITCLITKPVSCSEFVKEAGRGGKGNLPLDGT--PTIVQSEPWDGKDGEVIEEDEF 431

Query: 339 DLSDV 353
            L ++
Sbjct: 432 SLEEL 436


>01_01_1209 -
           9738501-9738516,9738703-9739161,9739389-9739608,
           9739708-9739831,9739927-9740635,9741826-9742132,
           9742213-9743704
          Length = 1108

 Score = 30.3 bits (65), Expect = 0.91
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 241 PRPNERPLRNSLMPVSEKD-PLRVENLSFFALTTAMAG*PNPPSSKASSR 95
           PRP ++P  +SL+P  + + PLR + L+F             PSS AS R
Sbjct: 12  PRPTQQPPASSLLPPPQPEPPLRADRLAFSLEVPDPFRREPDPSSAASQR 61


>01_01_0274 - 2263304-2264211,2264490-2264673
          Length = 363

 Score = 30.3 bits (65), Expect = 0.91
 Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
 Frame = +3

Query: 78  AAAQPTLEEALELGGFGYPAMAVVNAKKLKFSTLRGSFSE-TGINEFLRGLSFGRGQTAP 254
           AA   + EE LELG  G P +A V           G+ SE  GI++   GL    G+  P
Sbjct: 103 AAGPGSTEEDLELGAPGLPRVAEVGLSGSDVLRFGGASSEKPGISDGFHGLDLTVGE-LP 161

Query: 255 VKGAEMPKITTTEPWDGNDGELPLEED 335
           ++G +       E  D     L +E D
Sbjct: 162 LEGVDAIVFAGEELLDIVGAGLEIEVD 188


>06_01_0570 +
           4026889-4027537,4028340-4028689,4029258-4029433,
           4029593-4029659,4029746-4029780,4030084-4030186,
           4031606-4031699,4031764-4031813,4031889-4032000,
           4032275-4032401,4032491-4032941
          Length = 737

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = -3

Query: 238 RPNERPLRNSLMPVSEKDPLRVENLSFFALTTAMAG*PNPPSSKASSRVGCAAASAHI 65
           RP  R LR SL+     DP+    L    L  ++   P+P +  A+     AAA+AH+
Sbjct: 39  RPTPRLLRASLLRRLAADPVSAAALDSLQLLASLPSSPSPAAPAAA-----AAAAAHL 91


>12_02_1160 + 26592537-26593046,26593588-26593635
          Length = 185

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +3

Query: 57  WGWIWAEAAAQP 92
           WGW WA AAA P
Sbjct: 127 WGWTWATAAALP 138


>09_02_0140 +
           4879319-4879968,4881443-4881942,4884230-4884368,
           4886005-4886156,4886267-4886532,4886902-4887028,
           4887111-4887179,4887270-4887518,4887636-4888012
          Length = 842

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 99  EEALELGGFGYPAMAVVNAKKLKFSTLRGSFSETGINEFL 218
           E+ L  GGFGY    ++         LR   S  G+ EFL
Sbjct: 528 EQVLGKGGFGYVYYGILEEGTQVAVKLRSQSSNQGVKEFL 567


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,623,551
Number of Sequences: 37544
Number of extensions: 186695
Number of successful extensions: 767
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)