Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_D09
         (501 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0)                177   4e-45
SB_50351| Best HMM Match : I-set (HMM E-Value=0.00016)                 31   0.71 
SB_28212| Best HMM Match : C1_3 (HMM E-Value=0.59)                     31   0.71 
SB_59684| Best HMM Match : C1_3 (HMM E-Value=8.3)                      30   1.2  
SB_9920| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_21207| Best HMM Match : Cor1 (HMM E-Value=8.1e-26)                  28   3.8  
SB_11375| Best HMM Match : EGF_CA (HMM E-Value=0)                      28   3.8  
SB_56253| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)                   27   8.7  
SB_13211| Best HMM Match : Extensin_2 (HMM E-Value=0.0053)             27   8.7  
SB_385| Best HMM Match : SRP54_N (HMM E-Value=1.1)                     27   8.7  
SB_14020| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 362

 Score =  177 bits (431), Expect = 4e-45
 Identities = 75/123 (60%), Positives = 98/123 (79%)
 Frame = +3

Query: 3   NDYISILKRLGDKYKSKMWGWIWAEAAAQPTLEEALELGGFGYPAMAVVNAKKLKFSTLR 182
           N Y++ LK LG+KYK   WGW+W+EAAAQP LEEA+E+GGFGYPAM  VN +K KF+ L+
Sbjct: 233 NTYLANLKELGEKYKKNRWGWLWSEAAAQPKLEEAVEVGGFGYPAMVAVNIRKKKFAVLK 292

Query: 183 GSFSETGINEFLRGLSFGRGQTAPVKGAEMPKITTTEPWDGNDGELPLEEDIDLSDVDLE 362
           GSF  TGI+EFLR +S GRG TA ++G  +P++++ E WDG DG+LP EEDIDLSDVDL+
Sbjct: 293 GSFDRTGIDEFLRTVSVGRGSTATMRGDSLPELSSIEAWDGKDGQLPQEEDIDLSDVDLD 352

Query: 363 KDE 371
            ++
Sbjct: 353 DED 355


>SB_50351| Best HMM Match : I-set (HMM E-Value=0.00016)
          Length = 419

 Score = 30.7 bits (66), Expect = 0.71
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 160 FFALTTAMAG*PNPPSSKASSRVGCAAASAHIHP 59
           FF ++  ++G  +PP      RV C A  +H+ P
Sbjct: 120 FFRISCGVSGSQDPPQESCPFRVSCGALGSHVPP 153


>SB_28212| Best HMM Match : C1_3 (HMM E-Value=0.59)
          Length = 218

 Score = 30.7 bits (66), Expect = 0.71
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 378 AISIVNCV*CFIVFCAMCCVRVCL 449
           A  ++ CV CF++ C  CCV  C+
Sbjct: 93  ACRVMCCVACFVMHCVACCVMRCV 116



 Score = 29.9 bits (64), Expect = 1.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 387 IVNCV*CFIVFCAMCCVRVCL 449
           ++ CV CF++ C  CCV  C+
Sbjct: 24  VMCCVACFVMHCVACCVMRCV 44



 Score = 28.7 bits (61), Expect = 2.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 378 AISIVNCV*CFIVFCAMCCVRVCL 449
           A  ++ CV C ++ C  CCV  C+
Sbjct: 53  ACCVMRCVACCVMHCVACCVMRCV 76



 Score = 27.9 bits (59), Expect = 5.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 378 AISIVNCV*CFIVFCAMCCVRVCL 449
           A  +++CV C ++ C  CCV  C+
Sbjct: 29  ACFVMHCVACCVMRCVACCVMRCV 52



 Score = 27.9 bits (59), Expect = 5.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 378 AISIVNCV*CFIVFCAMCCVRVCL 449
           A  ++ CV C ++ C  CCV  C+
Sbjct: 37  ACCVMRCVACCVMRCVACCVMRCV 60



 Score = 27.9 bits (59), Expect = 5.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 378 AISIVNCV*CFIVFCAMCCVRVCL 449
           A  ++ CV C ++ C  CCV  C+
Sbjct: 45  ACCVMRCVACCVMRCVACCVMHCV 68



 Score = 27.9 bits (59), Expect = 5.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 378 AISIVNCV*CFIVFCAMCCVRVCL 449
           A  +++CV C ++ C  CCV  C+
Sbjct: 101 ACFVMHCVACCVMRCVACCVMRCV 124



 Score = 27.9 bits (59), Expect = 5.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 378 AISIVNCV*CFIVFCAMCCVRVCL 449
           A  ++ CV C ++ C  CCV  C+
Sbjct: 109 ACCVMRCVACCVMRCVACCVMRCV 132



 Score = 27.9 bits (59), Expect = 5.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 378 AISIVNCV*CFIVFCAMCCVRVCL 449
           A  ++ CV C ++ C  CCV  C+
Sbjct: 141 ACRVMRCVACCVMRCVACCVMRCV 164



 Score = 27.1 bits (57), Expect = 8.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 378 AISIVNCV*CFIVFCAMCCVRVCL 449
           A  ++ CV C ++ C  CCV  C+
Sbjct: 117 ACCVMRCVACCVMRCVGCCVMRCV 140


>SB_59684| Best HMM Match : C1_3 (HMM E-Value=8.3)
          Length = 138

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 387 IVNCV*CFIVFCAMCCVRVCL 449
           ++ CV CF++ C  CCV  C+
Sbjct: 16  VMCCVACFVMHCVACCVMRCV 36



 Score = 27.9 bits (59), Expect = 5.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 378 AISIVNCV*CFIVFCAMCCVRVCL 449
           A  +++CV C ++ C  CCV  C+
Sbjct: 21  ACFVMHCVACCVMRCVACCVMRCV 44



 Score = 27.9 bits (59), Expect = 5.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 378 AISIVNCV*CFIVFCAMCCVRVCL 449
           A  ++ CV C ++ C  CCV  C+
Sbjct: 29  ACCVMRCVACCVMRCVACCVMRCV 52



 Score = 27.9 bits (59), Expect = 5.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 378 AISIVNCV*CFIVFCAMCCVRVCL 449
           A  ++ CV C ++ C  CCV  C+
Sbjct: 61  ACRVMRCVACCVMRCVACCVMRCV 84



 Score = 27.1 bits (57), Expect = 8.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 378 AISIVNCV*CFIVFCAMCCVRVCL 449
           A  ++ CV C ++ C  CCV  C+
Sbjct: 37  ACCVMRCVACCVMRCVGCCVMRCV 60


>SB_9920| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 601

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 249 APVKGAEMPKITTTEPWDGNDGELPLEEDIDLSDVDL 359
           A  K +E+PK T    WD    ++P   D DL D DL
Sbjct: 292 AEYKPSEVPKKTKLYNWDPRPAKVPC--DFDLEDADL 326


>SB_21207| Best HMM Match : Cor1 (HMM E-Value=8.1e-26)
          Length = 375

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 147 VNAKKLKFSTLRGSFSETGINEFLRGLSFGRGQTAPVKG 263
           +N K+ K +        +G +EF   L  G  +TAPVKG
Sbjct: 93  LNPKRNKPAAKSSKLDTSGFDEFDDDLMIGEEETAPVKG 131


>SB_11375| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 651

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +3

Query: 339 DLSDVDLEKDEL*AISIVNCV*CFIVFCAMCCVRVCLLV 455
           DLSD   EKD L  IS+V C+   IVFC +  +   L +
Sbjct: 580 DLSDA--EKDALKYISLVGCI-ISIVFCGLAILAFTLAI 615


>SB_56253| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +3

Query: 255 VKGAEM-PKITTTEPWDGNDGE 317
           + G EM PK T T+PW  ND E
Sbjct: 16  IPGPEMIPKSTPTDPWTRNDTE 37


>SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1283

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 267  EMPKITTTEPWDGNDGELPLEEDIDLSDVDLEKDE 371
            E+P    T+ W+G D +  ++E  D  D D +K++
Sbjct: 1105 EVPADGVTDKWEGEDEDDDIKESWDDDDEDEKKED 1139


>SB_13211| Best HMM Match : Extensin_2 (HMM E-Value=0.0053)
          Length = 545

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 145 TAMAG*PNPPSSKASSRVGCAAASAHIHPHILLLYLSPR 29
           TA+ G  +PP +     +G  A   HI PH+  ++LSPR
Sbjct: 73  TAVLGPHSPPLN-----IGPNAPPVHIGPHVPAVHLSPR 106


>SB_385| Best HMM Match : SRP54_N (HMM E-Value=1.1)
          Length = 210

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 273 PKITTTEPWDGNDGELPLEEDIDLSDVDLEKDE 371
           PK +  +P +G D     E+D D  D D+E DE
Sbjct: 28  PKASGRKPKEGKDDSEEEEDDNDDDDGDIEGDE 60


>SB_14020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = -3

Query: 238 RPNERPLRNSLMPVSEKDPLRVENLSFFALTTAMAG*PNPPSSKASSRVGCAAASAHIHP 59
           RPNE P+  S++ +++  P+R E  +  ALT+  A        + + RV  A  S  ++P
Sbjct: 84  RPNE-PISKSILMIAQVVPVRTEPHAMTALTSTRAHAFLDSQEQTARRVR-AFVSGDLNP 141

Query: 58  -HILLLYLSP 32
            H     L+P
Sbjct: 142 VHSAAFVLNP 151


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,878,402
Number of Sequences: 59808
Number of extensions: 193503
Number of successful extensions: 732
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)