Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_D06
         (363 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   2.7  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   3.6  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    25   4.8  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    24   6.3  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    24   6.3  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    24   8.3  

>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = -2

Query: 182 SAIYLG---SLLAKSIAERQLFRRKETMLRLST 93
           +A+ LG   S LAK I +RQL  R ET++  ST
Sbjct: 359 AALLLGVDSSTLAKWIVKRQLKTRSETIITSST 391


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 195 DLKNFCHLLGLAIGKVNSRTTAI 127
           DLKNF  +L   + KVN +T +I
Sbjct: 480 DLKNFSLVLCTHVAKVNEKTNSI 502


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
 Frame = -3

Query: 121 VKKRCYDCPLETHF---CTILSTS 59
           V+K CY+C  + HF   CT+ S S
Sbjct: 185 VRKFCYNCASDEHFGDDCTLPSRS 208


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -1

Query: 354 LPCISASRC*CSDVSTLEYFGISRIASSKHSIS 256
           L C+S+SR   S+ + +  + I  I +SK+SIS
Sbjct: 316 LRCLSSSRIVNSETNVMVPYMIYSILNSKNSIS 348


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +1

Query: 34  IVVASYFALKWIILCKNESPVDNRSIVSLRRNSCRSA 144
           I+   YF++ WI  C+         I S  +N   SA
Sbjct: 213 IITVDYFSIYWISKCEISKCTTTEDIFSYLKNLIPSA 249


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 109 CYDCPLETHFCTILSTSMQNNSRQQFKY 26
           C D  L   FCT ++ S++   +   KY
Sbjct: 290 CLDLGLSGEFCTAVAHSIREQCQMYIKY 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,492,127
Number of Sequences: 5004
Number of extensions: 27609
Number of successful extensions: 80
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)