Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_D06
         (363 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0317 - 7414477-7414555,7414646-7414701,7415877-7416024,741...    33   0.091
11_06_0715 + 26552962-26553510,26553578-26555746                       27   6.0  
11_01_0292 - 2200714-2201478,2202691-2203395                           27   6.0  
02_05_0658 + 30676990-30677388                                         27   6.0  
08_02_0067 - 11863092-11863104,11863432-11863547,11863610-118639...    26   7.9  

>03_02_0317 -
           7414477-7414555,7414646-7414701,7415877-7416024,
           7416376-7416380,7416512-7416594,7416707-7416878
          Length = 180

 Score = 32.7 bits (71), Expect = 0.091
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +2

Query: 83  MSLQWTIVASFLYAEIAVVLLLTLPIASPSRWQ 181
           M+LQW I+A  + AE AV ++LTLP     R Q
Sbjct: 1   MALQWMILACVVAAEAAVAVMLTLPAPRAVRKQ 33


>11_06_0715 + 26552962-26553510,26553578-26555746
          Length = 905

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 180 RNFSSPNSSLILAGKLRFTSL 242
           RN SSPN   ++AGK R+ S+
Sbjct: 550 RNMSSPNLLTLVAGKCRYMSV 570


>11_01_0292 - 2200714-2201478,2202691-2203395
          Length = 489

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 128 IAVVLLLTLPIASPSRWQKFF 190
           +A +L LT+P   P+ W KF+
Sbjct: 244 VAFLLKLTIPSTLPTEWNKFY 264


>02_05_0658 + 30676990-30677388
          Length = 132

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 83  MSLQWTIVASFLYAEIAVVLLLTLP 157
           M+L+W ++     AE  ++LLLTLP
Sbjct: 1   MALEWVVLGYAAGAEAIMLLLLTLP 25


>08_02_0067 -
           11863092-11863104,11863432-11863547,11863610-11863950,
           11864978-11865331,11866055-11866150,11866812-11866980,
           11867541-11867618,11867745-11867926,11868010-11868094,
           11868545-11868648,11869510-11869590,11870123-11870240,
           11871299-11871430,11871635-11871788,11871838-11871917
          Length = 700

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 168 QVDGRNFSSPNSSLILAGKLRFTSL 242
           QVDGRN  +P  S +    LRF SL
Sbjct: 606 QVDGRNHGAPEVSGVSDEGLRFASL 630


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,007,549
Number of Sequences: 37544
Number of extensions: 156876
Number of successful extensions: 411
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)