Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_D04
         (594 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61350.1 68418.m07698 protein kinase family protein contains ...    29   2.3  
At2g39360.1 68415.m04831 protein kinase family protein contains ...    29   2.3  
At4g15093.1 68417.m02319 catalytic LigB subunit of aromatic ring...    28   5.4  

>At5g61350.1 68418.m07698 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 842

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 23/69 (33%), Positives = 31/69 (44%)
 Frame = +3

Query: 267 RLVVNKLLAESKRNVVDYAYKLVRKGEIGIVRDYFPIHFRWILLGEQVKFINLRDANALK 446
           R V+N  L   + N+ +YA  L RKG +  + D  P     I  G   KF+    A    
Sbjct: 728 RPVINPQLPREQVNLAEYAMNLHRKGMLEKIID--PKIVGTISKGSLRKFVEA--AEKCL 783

Query: 447 LEWGTDRDG 473
            E+G DR G
Sbjct: 784 AEYGVDRPG 792


>At2g39360.1 68415.m04831 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 815

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 267 RLVVNKLLAESKRNVVDYAYKLVRKGEIGIVRDYF 371
           R V++  L   K N++++A KLV+KG++  + D F
Sbjct: 686 RPVIDPSLPREKVNLIEWAMKLVKKGKLEDIIDPF 720


>At4g15093.1 68417.m02319 catalytic LigB subunit of aromatic
           ring-opening dioxygenase family contains Pfam PF02900:
           Catalytic LigB subunit of aromatic ring-opening
           dioxygenase
          Length = 269

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 477 RGAYGDKNEWESDRMSWKIIPHWWNQRAY 563
           +G YGD NEWE    + K + H W +  Y
Sbjct: 204 QGRYGDVNEWEEKAPNAK-MAHPWPEHLY 231


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,976,651
Number of Sequences: 28952
Number of extensions: 231541
Number of successful extensions: 615
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)