Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_D03
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi...   180   2e-46
SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr ...    29   0.35 
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    29   0.46 
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    29   0.61 
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    26   4.3  
SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|ch...    25   5.7  
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.5  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    25   7.5  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   7.5  
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce...    25   7.5  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.9  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    25   9.9  

>SPAC27D7.06 |||electron transfer flavoprotein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 341

 Score =  180 bits (437), Expect = 2e-46
 Identities = 93/179 (51%), Positives = 119/179 (66%), Gaps = 2/179 (1%)
 Frame = +1

Query: 1   LTLEAKDPVKVITVRSTAFPPEPLEGGSGAVEKAPDGDYK-TDLAEFVSQELTKSDRPEL 177
           +T+  KDP+K++TVR++AF   P   G GA       D K   L E+VS+ + K+ RP+L
Sbjct: 164 VTVSTKDPIKIVTVRASAFDAAP-SSGEGAATVVEGIDPKPAALQEWVSENIIKNARPDL 222

Query: 178 TSAKNIVSGGRGLKSGDNF-KLLYDLADKLNXXXXXXXXXXXXXFVPNDLQIGQTGKIVA 354
           +SA+ +V+GGR LK  + F ++L  LADKL              +  N LQIGQTGKI+A
Sbjct: 223 SSAERVVAGGRPLKDKETFERILTPLADKLGAAIGATRVAVDSGYADNSLQIGQTGKIIA 282

Query: 355 PDLYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVSDHGLVADLFKAVPELTSKL 531
           P LYIAVGI GAIQHLAG+KDSK I AIN+D  APIFQ +D G+V DLF+ VPELT KL
Sbjct: 283 PKLYIAVGIDGAIQHLAGIKDSKVIAAINRDENAPIFQTADVGIVGDLFEIVPELTEKL 341


>SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 29.5 bits (63), Expect = 0.35
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +1

Query: 172 ELTSAKNIVSGGRGLKSGDNFKLLYDLA 255
           +LT    I+S  RG KSGDNF  L++LA
Sbjct: 147 DLTQMAKIISTRRG-KSGDNFVYLFELA 173


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +1

Query: 331 GQTG-KIVAPDLYIAVGISGAIQHLAGMKDSKTIVAINKDPEA 456
           G++G + V P  Y+A+   G    +A ++ +K +  +N+D EA
Sbjct: 114 GKSGIRRVVPGEYLAIDAKGRAAMIASVEKNKLVYVLNRDSEA 156


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 28.7 bits (61), Expect = 0.61
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 442  KDPEAPIFQVSDHGLVADLFKAVPELTS 525
            KDPE  + +++   ++ D FK +PE +S
Sbjct: 1276 KDPEGDLLELACFSMMIDFFKVLPEFSS 1303


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +1

Query: 358 DLYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVSDHGLVADLF 501
           D+Y+    +G I+HLA  +  K +VA      +PI     +GL ++LF
Sbjct: 205 DVYLVERATGRIEHLASDQSKKIVVA----EWSPIGHKLVYGLGSNLF 248


>SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 513 WNRLEQIRHQTVIGYLEDRRFWIFVD 436
           W++L ++RH  +   L++  F +FVD
Sbjct: 236 WSKLSKVRHGRIDFVLDNAGFELFVD 261


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 512 GTALNKSATKP*SDTWKIGASGSLLMATIVLESFI 408
           G  + KS+ K  SD W    SG+ LMA I +  F+
Sbjct: 203 GGLMAKSSMKSQSDIWNEYTSGNWLMAFIWVGLFL 237


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 453  FWIFVDGDNSLGVFHSG*MLNSAAN 379
            FWIFV+  N L + H   +L +  N
Sbjct: 1028 FWIFVEDSNGLEILHHEQLLLNKRN 1052


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 379 ISGAIQHLAGMKDSKTIVAINKDPEAPIFQVSDHGL 486
           IS ++Q  +    + ++ AI K+PEAP  + + HG+
Sbjct: 335 ISSSVQVNSLAFITSSLSAITKEPEAPETEYNPHGV 370


>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 103 PDGDYKTDLAEFVSQELTKSDRPEL 177
           PD DYKT +   V Q L+  D  +L
Sbjct: 143 PDHDYKTIIQNEVEQTLSPKDEKDL 167


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -3

Query: 200 ETIFLALVSSGLSDFVSSCDTNSARSVL*SPSGAFSTAPEPPSKGSGGKA 51
           +T+ L   ++GLS    S + NS +    SPS     + +  S G   KA
Sbjct: 825 DTLSLKTSTTGLSSHSKSAENNSTQQSTTSPSINSGASADAVSSGISKKA 874


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 14/59 (23%), Positives = 23/59 (38%)
 Frame = +1

Query: 13  AKDPVKVITVRSTAFPPEPLEGGSGAVEKAPDGDYKTDLAEFVSQELTKSDRPELTSAK 189
           AKDPVK +T  +     +P E     +       Y        + E  K ++P+ T  +
Sbjct: 282 AKDPVKALTSTNNVEEEDPAEDIGKIIASGQTRAYLAQKEREKNGESEKDEKPDNTDVE 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.138    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,315,017
Number of Sequences: 5004
Number of extensions: 44485
Number of successful extensions: 142
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)