Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_D03
(556 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0581 + 34886728-34886817,34886990-34887175,34887332-348875... 145 2e-35
05_07_0196 + 28352320-28352522,28352679-28352808,28353774-283538... 31 0.82
08_02_1223 - 25381462-25381575,25381822-25382061,25382570-253827... 29 1.9
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 29 1.9
01_01_1237 - 10047417-10047934,10048899-10049136 29 1.9
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 29 1.9
11_06_0045 - 19571978-19571983,19572122-19572211,19572493-195725... 29 2.5
08_01_0300 + 2427524-2427827,2429066-2429274,2429512-2430150 29 2.5
01_01_0803 + 6252721-6252736,6252807-6253252,6253372-6253613,625... 29 3.3
12_02_0986 + 25055674-25056571,25057741-25057782,25058651-25059888 28 4.4
07_03_0716 + 20905041-20905851,20906644-20906825,20907117-209073... 28 5.8
03_02_0529 + 9218734-9218793,9218898-9220050,9220133-9220192,922... 28 5.8
04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184... 27 7.6
03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,874... 27 7.6
01_06_0563 - 30266533-30266846,30266935-30267274 27 7.6
>03_06_0581 +
34886728-34886817,34886990-34887175,34887332-34887543,
34888161-34888318,34888615-34888773,34888921-34888973,
34889265-34889405,34889788-34889823,34890542-34890776,
34891017-34891144
Length = 465
Score = 145 bits (352), Expect = 2e-35
Identities = 76/158 (48%), Positives = 107/158 (67%), Gaps = 5/158 (3%)
Frame = +1
Query: 16 KDPVKVITVRSTAFPP-EPLEGGSGAVEKAPDGDYKTD----LAEFVSQELTKSDRPELT 180
+DP ++++RST+F P E + A D + ++ + +V+ + ++RP+L
Sbjct: 179 EDPC-MMSIRSTSFSPTEAMSEAKVAPITQVDLSFLSEGSSGKSAWVNLKSQDTERPDLA 237
Query: 181 SAKNIVSGGRGLKSGDNFKLLYDLADKLNXXXXXXXXXXXXXFVPNDLQIGQTGKIVAPD 360
+A +V+GGRGLKS +NFK+L LA+KL FVPN+LQ+GQTGKIVAP+
Sbjct: 238 NAPVVVTGGRGLKSAENFKVLEQLAEKLGAAVGATRAAVDAGFVPNELQVGQTGKIVAPE 297
Query: 361 LYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVS 474
LY+A G+SGAIQHLAGM+DSK IVA+NKD +APIFQVS
Sbjct: 298 LYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVS 335
>05_07_0196 +
28352320-28352522,28352679-28352808,28353774-28353851,
28355562-28355664,28356109-28356302,28356501-28356518
Length = 241
Score = 30.7 bits (66), Expect = 0.82
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +1
Query: 91 VEKAPDGDYKTDLAEFVSQELTKSDRPELTSAKNIVSGGRGLKSGDNFKLLYD 249
VE D+K+ + ++ D PEL SA+ SG + GD+ +Y+
Sbjct: 189 VEADTADDFKSVVQRLTGKDAVAGDAPELNSAQRFGSGREASRHGDHKVRIYE 241
>08_02_1223 -
25381462-25381575,25381822-25382061,25382570-25382707,
25383397-25383849,25384528-25385010
Length = 475
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -2
Query: 552 YVV*NSLQLRC*FWNRLEQIRHQTVIGYLEDRRFWIFVDGDNSLGVFHSG*MLNSAANAH 373
YVV L ++C LE IR G++ DR ++ D +G H G A+
Sbjct: 155 YVVSMFLDMKCVGMQYLEAIRRLRSAGFIPDRNIYLTFVPDEEIG-GHEGIEAFVASKEF 213
Query: 372 SDVQIG 355
D+ +G
Sbjct: 214 KDMNVG 219
>03_05_1065 +
30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -3
Query: 164 SDFVSSCDTNSARSVL*SPSGAFSTAPEPPSKGSGG 57
S F++SCD NS R + P A+ST E P++ + G
Sbjct: 83 SSFLTSCDDNSLR-LFYLPEEAYSTEAEHPAEAAVG 117
>01_01_1237 - 10047417-10047934,10048899-10049136
Length = 251
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Frame = -3
Query: 230 LSPDLRPRPPETIFLALVSSGLSDFVSSCDTNSARSVL*SPSGAFSTAP-----EPPSKG 66
L PDLRP E + + +D + D + ++V SP+ +TAP + P+ G
Sbjct: 166 LPPDLRPPAAEAPGPSSSAGAAADAPPTFDFSHPKNVSNSPADTSTTAPLDDADDAPTTG 225
Query: 65 SGGKAVLR 42
G+++ R
Sbjct: 226 GAGRSIAR 233
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 29.5 bits (63), Expect = 1.9
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +3
Query: 273 SGRV-PCG-GRRWLRAKRSADWADRQNRRARSVHRCGH*RRYSTFSRN---ERLQDYCRH 437
SGR CG W R ++ DW +R RR RS R RR + R+ R + Y R
Sbjct: 108 SGRCFNCGIDGHWARDCKAGDWKNRCYRRGRSYSRSPSPRRGRSRGRSYSRSRSRSYSRS 167
Query: 438 QQRSRSA 458
Q R +
Sbjct: 168 QSPRRDS 174
>11_06_0045 -
19571978-19571983,19572122-19572211,19572493-19572552,
19572688-19572767,19575033-19575105
Length = 102
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +1
Query: 43 RSTAFPPEPLEGGSGAVEKAPDGDYKTDLAEF--VSQELTKSDRPELTSAKN 192
R+ P P GSG+ K + YK++ E + E + R +TS+KN
Sbjct: 11 RARPLQPSPTISGSGSFTKFINASYKSECLELYEMMDEYCRIGRRHITSSKN 62
>08_01_0300 + 2427524-2427827,2429066-2429274,2429512-2430150
Length = 383
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 4 TLEAKDPVKVITVRSTAFPPEPLEGGSGAVEKAPDGDYKTDLAE 135
T A+ PVK+ VR PP GG G + K+ LAE
Sbjct: 34 TCTARGPVKLFGVRIGDKPPTAAAGGGGGMRKSASMGSLAQLAE 77
>01_01_0803 +
6252721-6252736,6252807-6253252,6253372-6253613,
6253753-6253849,6253984-6254167,6254241-6254322,
6254602-6254647,6255473-6255490
Length = 376
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 298 RPPHGTR-PLQRSTCPLGRTAA*SYPRT*DPAHRKQYS 188
+PPH TR PL+R PL R S+P P R+ ++
Sbjct: 10 KPPHLTRLPLRRDMLPLRRLPPLSFPLPRGPTPRRLFA 47
>12_02_0986 + 25055674-25056571,25057741-25057782,25058651-25059888
Length = 725
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -3
Query: 173 SGLSDFVSSCDTNSARSVL*SPSGAFSTAPEPPSKGSGGKAVLRTVITFTGS 18
SG + +CD ++ + L P+ ST EP S GK+ T TF S
Sbjct: 58 SGDCPILLACDEGNSTAALLRPTNGTSTTMEPLSYAVVGKSFNSTASTFVVS 109
>07_03_0716 +
20905041-20905851,20906644-20906825,20907117-20907330,
20907416-20907653,20907905-20908058,20908190-20908461,
20908703-20908808
Length = 658
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 67 PLEGGSGAVEKAPDGDYKTDLAEFVSQELTKSDRPELTSAKNIVSGGRG 213
P + + P+G YKT+L + +T ++ +L SA N +G G
Sbjct: 25 PFCSNANTITHMPEGTYKTNLLQLAKNLITNVNQTQLHSA-NGTAGAAG 72
>03_02_0529 +
9218734-9218793,9218898-9220050,9220133-9220192,
9220284-9220363,9220486-9220730,9220815-9221138,
9221211-9221274,9221968-9222144
Length = 720
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +1
Query: 43 RSTAFPPEPLEGGSGAVEKAPDGDYKTDLAEFVSQELTKSDRPELTSAKNIV 198
RST+FP P G V++ D D K+ S + RP T+ + V
Sbjct: 231 RSTSFPRVPKGGAGFTVDRDEDDDDKSSGCTHPSTATNRGFRPNCTAGHSRV 282
>04_01_0162 +
1845295-1846317,1846430-1846565,1848436-1848626,
1848780-1848887,1849001-1849204,1849294-1849525,
1849602-1849751,1849830-1850007,1850416-1850519,
1850611-1850933,1851274-1851459,1851672-1851899
Length = 1020
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 113 SPSGAFSTAPEPPSKGSGGKA 51
S G F+ AP+PPS+G G A
Sbjct: 107 SSQGPFAAAPQPPSQGPFGTA 127
>03_02_0473 +
8745721-8745994,8746083-8746090,8746232-8746324,
8746665-8746893,8747314-8747420,8747560-8747622,
8747883-8747983,8748996-8749090,8749330-8749350,
8749987-8750082,8750188-8750308,8750415-8750570,
8750679-8750869,8751207-8751478,8751853-8751954,
8752006-8752038,8752132-8752308,8752397-8752466,
8752512-8752585,8752667-8752908,8752983-8753129,
8753526-8753751,8753893-8753970,8754378-8754521,
8754829-8755008,8755335-8755394,8755484-8755523,
8758653-8759137
Length = 1294
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 85 GAVEKAPDGDYKTDLAEFVSQELTKSDRPELTSAKNIVSGGRG 213
GA ++A + +D E + +L ++ +PE T N +S G G
Sbjct: 489 GAYDEAANLQSYSDNVESLDSDLNENSQPEATRKANPLSNGHG 531
>01_06_0563 - 30266533-30266846,30266935-30267274
Length = 217
Score = 27.5 bits (58), Expect = 7.6
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = -3
Query: 161 DFVSSCDTNSARSVL*SPSGAFSTAPEP 78
D VSS D N+AR+ SPS A +TAP P
Sbjct: 30 DVVSSRD-NTARAPSSSPSAATATAPAP 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.138 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,655,583
Number of Sequences: 37544
Number of extensions: 350867
Number of successful extensions: 1341
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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