Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_D03
         (556 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13745| Best HMM Match : No HMM Matches (HMM E-Value=.)             210   8e-55
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)                    31   0.84 
SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.)                 31   0.84 
SB_48564| Best HMM Match : NCD3G (HMM E-Value=3.4e-08)                 28   4.5  

>SB_13745| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 301

 Score =  210 bits (512), Expect = 8e-55
 Identities = 99/156 (63%), Positives = 119/156 (76%)
 Frame = +1

Query: 4   TLEAKDPVKVITVRSTAFPPEPLEGGSGAVEKAPDGDYKTDLAEFVSQELTKSDRPELTS 183
           T+++ DP+KV+TVR TAF     +GG+   E AP  D   +L+ FV Q+L  SD PELTS
Sbjct: 31  TIKSTDPIKVMTVRGTAFEAASTDGGAVTAEDAPSSDTNNELSSFVKQDLHVSDLPELTS 90

Query: 184 AKNIVSGGRGLKSGDNFKLLYDLADKLNXXXXXXXXXXXXXFVPNDLQIGQTGKIVAPDL 363
           AK +VSGGRG+KSG+NF++LYD+A KLN             +VPND+Q+GQTGK+VAPDL
Sbjct: 91  AKVVVSGGRGMKSGENFQMLYDMAAKLNAAVGASRAAVDAGYVPNDMQVGQTGKMVAPDL 150

Query: 364 YIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQV 471
           YIAVGISGAIQHLAGMKDSK IVAINKDPEAPIFQV
Sbjct: 151 YIAVGISGAIQHLAGMKDSKIIVAINKDPEAPIFQV 186


>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
          Length = 2128

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = -3

Query: 251  RSYSSLKLSPDLRP--RPPETIFLALVSSGLSDFVSSCDTNSARSVL*SPSGAFSTAPEP 78
            R++  LK +P+  P  RPP   + A+      DF SS    S   +   PS  F T  EP
Sbjct: 917  RTFEPLKPAPEPEPPSRPPLPSYRAISGRSWQDFESSRRKKSMELLNRPPSRTFETPAEP 976


>SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +3

Query: 264 ERCSGRVPCGGRRWLRAKRSADWADRQNRR--ARSVHRCGH*RRYSTFSRNERLQDYCRH 437
           E C G +   GRR  +  R+      +NR+     + +  H R    +SR+ER+ +  R+
Sbjct: 48  EGCRGGMGRVGRRGRKGHRNHKEPHNRNRKEPGNRIRKVEHNRNRKDYSRDERIHNRSRN 107

Query: 438 QQRSRS 455
             R+ S
Sbjct: 108 HNRNHS 113


>SB_48564| Best HMM Match : NCD3G (HMM E-Value=3.4e-08)
          Length = 180

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 21 SCESDHCSKHSFSS*TFGRWLWSCRK 98
          S + DH S H  S  T G W W+ R+
Sbjct: 7  SLQPDHTSPHGHSFVTIGYWSWTTRQ 32


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.138    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,167,519
Number of Sequences: 59808
Number of extensions: 370564
Number of successful extensions: 1035
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)