Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_D03
         (556 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50940.1 68414.m05727 electron transfer flavoprotein alpha su...   175   1e-44
At2g04235.1 68415.m00411 expressed protein weak similarity to ne...    32   0.22 
At3g55690.1 68416.m06187 expressed protein predicted proteins, A...    31   0.68 
At1g09795.1 68414.m01099 ATP phosphoribosyl transferase 2 (ATP-P...    27   6.4  

>At1g50940.1 68414.m05727 electron transfer flavoprotein alpha
           subunit family protein contains Pfam profile: PF00766
           electron transfer flavoprotein, alpha subunit
          Length = 363

 Score =  175 bits (427), Expect = 1e-44
 Identities = 85/174 (48%), Positives = 120/174 (68%), Gaps = 7/174 (4%)
 Frame = +1

Query: 31  VITVRSTAFPPEPLEGGS----GAVEKAPDGDYKTDL---AEFVSQELTKSDRPELTSAK 189
           ++T+RST+FP  P+   S      V +    +++ D    + +V +    ++RP+L SA+
Sbjct: 186 MLTIRSTSFPVTPITANSESKKATVSQIDLSNFEDDSVSKSRYVGRSTQDTERPDLGSAR 245

Query: 190 NIVSGGRGLKSGDNFKLLYDLADKLNXXXXXXXXXXXXXFVPNDLQIGQTGKIVAPDLYI 369
            +++GGR LKS +NFK++  LA+KL              +VPNDLQ+GQTGKIVAP+LY+
Sbjct: 246 VVITGGRALKSVENFKMIEKLAEKLGGAVGATRAAVDAGYVPNDLQVGQTGKIVAPELYM 305

Query: 370 AVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVSDHGLVADLFKAVPELTSKL 531
           A G+SGAIQHLAG+KDSK IVA+NKD +APIFQV+D+GLV DLF+ +PEL  KL
Sbjct: 306 AFGVSGAIQHLAGIKDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPELLEKL 359


>At2g04235.1 68415.m00411 expressed protein weak similarity to
           neurofilament protein (GI:161292) [Loligo pealei]; weak
           similarity to Glucoamylase S1/S2 precursor (EC 3.2.1.3)
           (Glucan 1,4-alpha- glucosidase) (1,4-alpha-D-glucan
           glucohydrolase) (Swiss-Prot:P08640) [Saccharomyces
           cerevisiae]
          Length = 1226

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 22/64 (34%), Positives = 29/64 (45%)
 Frame = -3

Query: 245 YSSLKLSPDLRPRPPETIFLALVSSGLSDFVSSCDTNSARSVL*SPSGAFSTAPEPPSKG 66
           + SL  S     R P +  L +     ++  S  DT SA  VL  P   F  +P P  KG
Sbjct: 195 FRSLARSESGDVRTPTSSHLLVEEKTPTEVTSRSDTGSAM-VLTEPKKLFPKSPVPVDKG 253

Query: 65  SGGK 54
           SGG+
Sbjct: 254 SGGR 257


>At3g55690.1 68416.m06187 expressed protein predicted proteins,
           Arabidopsis thaliana
          Length = 293

 Score = 30.7 bits (66), Expect = 0.68
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -3

Query: 140 TNSARSVL*SPSGAFSTAPEPPSKGSGGKAVLRTVITFTGSFA 12
           T S +S L SP+G FS  P PP+  S  +  L+ +    G  A
Sbjct: 96  TESTQSGLGSPNGPFSQVPSPPTSPSREEDSLKVLSAAAGEVA 138


>At1g09795.1 68414.m01099 ATP phosphoribosyl transferase 2
           (ATP-PRT2) identical to ATP phosphoribosyl transferase
           (AtATP-PRT2) [Arabidopsis thaliana] GI:6683619;
           supporting cDNA gi|6683618|dbj|AB025250.1|
          Length = 413

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -3

Query: 257 SARSYSSLKLSPDLRPRPPETIFLALVSSGLSDFVSSCDTNSARSVL 117
           S+ S S +  SP   P P  T+ L  +       V+SC +N+ +SVL
Sbjct: 19  SSSSSSLVPSSPLFSPIPSTTVSLTGIRQRCLRMVTSCVSNAQKSVL 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.138    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,743,994
Number of Sequences: 28952
Number of extensions: 257453
Number of successful extensions: 830
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)