Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_D02
         (426 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...    80   1e-16
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...    80   1e-16
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...    80   1e-16
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    40   2e-04
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    32   0.043
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   4.9  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   4.9  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    25   6.5  
SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces ...    25   6.5  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    24   8.6  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    24   8.6  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    24   8.6  
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    24   8.6  

>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score = 80.2 bits (189), Expect = 1e-16
 Identities = 36/46 (78%), Positives = 41/46 (89%)
 Frame = -1

Query: 426 SGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 289
           SGDA I  +VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 394 SGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAV 439


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 80.2 bits (189), Expect = 1e-16
 Identities = 36/46 (78%), Positives = 41/46 (89%)
 Frame = -1

Query: 426 SGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 289
           SGDA I  +VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 394 SGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAV 439


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 80.2 bits (189), Expect = 1e-16
 Identities = 36/46 (78%), Positives = 41/46 (89%)
 Frame = -1

Query: 426 SGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 289
           SGDA I  +VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 394 SGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAV 439


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 39.9 bits (89), Expect = 2e-04
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = -1

Query: 423 GDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-VIKAVN 286
           G   I  L    P+C+E F+++  +GRF +RD   TVAVG V+K ++
Sbjct: 616 GMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKILD 662


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 31.9 bits (69), Expect = 0.043
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -1

Query: 387 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIK 295
           PLC+   +E P LGRF +R    TVA G++K
Sbjct: 561 PLCLA--EECPALGRFILRRSGDTVAAGIVK 589


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +2

Query: 245 SAALVTLPPPASLKFTAFITPTATVCLMSRTAKRPRGGNSWKDST 379
           S  +VTLPPPAS   ++F T T T  + S ++     G+ + +++
Sbjct: 183 STDIVTLPPPAS-STSSFSTITNTSMIPSSSSFTTTTGSPYYNTS 226


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +2

Query: 230 PLVAFSAALVTLPPPASLKFTAFITPTATVCLMSRTA 340
           P  + ++   T+PP  S+  T  + PT ++   + TA
Sbjct: 73  PSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTA 109


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +2

Query: 209 NSASYFLPLVAFSAALVTLPPPASLKFTAFITPTATVCLMSRTAKRPRGGNSWKDSTH 382
           ++  ++  L+A    L  L   + L  T+F T   T   +  +  R +G ++WK ST+
Sbjct: 178 STIQFYTTLIAIIGELYHLQCLSPL--TSFFTSCVTPKTILESPLRKQGSHNWKTSTN 233


>SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 227

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 142 ATNSFLFYIFYMAYTVTLFLIYIRLYIHLKCFVITAN 32
           A + F  YI+ + +    F  + R+   L CF+I AN
Sbjct: 71  AFSIFSHYIYKINFDTFPFFSFKRMRFLLACFLIVAN 107


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = -2

Query: 134 LIPFLYFLHGLYCNIIFNLYKVIHTPQMFCYNCKLKCKFI 15
           + P LY  + L C      YK+I    +F Y   +   F+
Sbjct: 454 MTPILYSFYALLCCYYIYSYKLIPHSSIFVYTVPIISTFL 493


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -3

Query: 199 VLYTTAILHSPKGVQ-KERRATNS 131
           VLYT+    +PKGV    R ATNS
Sbjct: 364 VLYTSGSTGNPKGVAISHRAATNS 387


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 238 HQGQEVASTVNSSVLYTTAILHSPKGV 158
           H+ +   S    SVL+T+++  SP GV
Sbjct: 167 HERESFPSEPQVSVLFTSSVKRSPHGV 193


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 257 VTLPPPASLKFTAFITPTATVCLMSRTAKRPRGGNSWKDST 379
           + L P +S       TP+AT    S+  + P GG    D+T
Sbjct: 244 LNLKPRSSSNVNTEATPSATTTTSSKPKRDPFGGAKPVDNT 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,817,159
Number of Sequences: 5004
Number of extensions: 35602
Number of successful extensions: 112
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)