Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_D02
(426 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 76 1e-14
03_01_0547 + 4093196-4093657,4094267-4095148 76 1e-14
03_01_0544 + 4082528-4082989,4083585-4084466 76 1e-14
03_01_0543 + 4076981-4077442,4078145-4079026 76 1e-14
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 37 0.006
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 35 0.032
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 35 0.032
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 32 0.17
05_03_0304 - 12000760-12001164,12001176-12001273,12004858-12005152 29 1.6
02_03_0125 + 15529391-15529495,15530066-15530226,15530315-155305... 29 1.6
02_05_0471 - 29306334-29306398,29306579-29306775,29307744-29309665 28 3.6
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 27 6.3
07_01_0219 - 1627669-1629765 27 6.3
05_01_0296 - 2303344-2303395,2303732-2304180,2304287-2304355,230... 27 6.3
04_01_0022 + 324422-324445,324870-325265,325366-325546,325781-32... 27 8.3
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 76.2 bits (179), Expect = 1e-14
Identities = 33/46 (71%), Positives = 41/46 (89%)
Frame = -1
Query: 426 SGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 289
+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 384 NGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 76.2 bits (179), Expect = 1e-14
Identities = 33/46 (71%), Positives = 41/46 (89%)
Frame = -1
Query: 426 SGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 289
+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 384 NGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 76.2 bits (179), Expect = 1e-14
Identities = 33/46 (71%), Positives = 41/46 (89%)
Frame = -1
Query: 426 SGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 289
+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 384 NGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 76.2 bits (179), Expect = 1e-14
Identities = 33/46 (71%), Positives = 41/46 (89%)
Frame = -1
Query: 426 SGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 289
+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 384 NGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 37.1 bits (82), Expect = 0.006
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -1
Query: 426 SGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 289
S A++ + K +CVE F LGR +R T+AVG++ V
Sbjct: 605 SRQTAVIEVKLEKEVCVEEFSNLKALGRVFLRSQGNTIAVGIVSRV 650
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 34.7 bits (76), Expect = 0.032
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -1
Query: 414 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 298
A+V + P+CV+ F + LGR +R T+AVGV+
Sbjct: 633 AVVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 34.7 bits (76), Expect = 0.032
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -1
Query: 414 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 298
A+V + P+CV+ F + LGR +R T+AVGV+
Sbjct: 633 AVVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 32.3 bits (70), Expect = 0.17
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 426 SGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 331
+G + + + +C+E+F +FP LGRF +R
Sbjct: 384 NGAVVVCRIQVNNLICIENFSDFPQLGRFTLR 415
>05_03_0304 - 12000760-12001164,12001176-12001273,12004858-12005152
Length = 265
Score = 29.1 bits (62), Expect = 1.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2
Query: 416 PPLSTWFPPSPCVW 375
PP+S+ PPSPC W
Sbjct: 175 PPISSGMPPSPCEW 188
>02_03_0125 +
15529391-15529495,15530066-15530226,15530315-15530570,
15531360-15531374,15533608-15533967
Length = 298
Score = 29.1 bits (62), Expect = 1.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 313 RRRCNKGCELQGSRWWQSHQSCRKSHQGQEVASTVNSS 200
RRRC+K L+ R W++ C G+ V + N++
Sbjct: 102 RRRCSKSVALRDLRLWEASTMCALLSVGERVRRSSNTA 139
>02_05_0471 - 29306334-29306398,29306579-29306775,29307744-29309665
Length = 727
Score = 27.9 bits (59), Expect = 3.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -2
Query: 203 LSFIYNCDTSFTERCSEGKKGYKLIPFLYFLHGLYCNI 90
L + SF E+C+ GK L+ L+ + +YCN+
Sbjct: 226 LKYALRATKSF-EKCAGGKPSLNLVMSLHVVAAIYCNL 262
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 27.1 bits (57), Expect = 6.3
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +1
Query: 91 MLQYKPCKKYRKGMSL*P-FFPSE 159
M + PCKK +KGM++ P FF S+
Sbjct: 661 MSKLNPCKKQKKGMNILPKFFTSK 684
>07_01_0219 - 1627669-1629765
Length = 698
Score = 27.1 bits (57), Expect = 6.3
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = -2
Query: 269 VAKSPKLPKKPPRARS 222
VAK PKLP++ P+ARS
Sbjct: 298 VAKLPKLPREGPKARS 313
>05_01_0296 -
2303344-2303395,2303732-2304180,2304287-2304355,
2304539-2306546,2311181-2311425
Length = 940
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 10 YSMNLHFSLQL*QNI*GVCITLYKLKIMLQYKPCKKYR 123
+S+N+ +SL L Q I +C+ L L + K +KY+
Sbjct: 206 WSLNIFYSLVLAQGIIFICMLLNPLTVYFVLKVRRKYK 243
>04_01_0022 +
324422-324445,324870-325265,325366-325546,325781-326072,
326389-326461,326610-326700,326815-326894,326992-327234
Length = 459
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 272 PASLKFTAFITPTATVCLMSRTAKRPRGGNSWKDST 379
PA + A ITPT T ++S A P G S + ++
Sbjct: 43 PAPTQAAADITPTPTTSILSTKASTPAGSCSSRSTS 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,307,019
Number of Sequences: 37544
Number of extensions: 257914
Number of successful extensions: 927
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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