Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_D02
(426 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 84 4e-17
SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015) 39 0.002
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 31 0.40
SB_57396| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.70
SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 29 1.2
SB_30566| Best HMM Match : zf-C4_Topoisom (HMM E-Value=0.38) 29 2.1
SB_50181| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051) 28 2.8
SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25) 28 2.8
SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 28 3.7
SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11) 28 3.7
SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10) 28 3.7
SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05) 28 3.7
SB_23935| Best HMM Match : bZIP_Maf (HMM E-Value=0.76) 28 3.7
SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20) 28 3.7
SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29) 28 3.7
SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6) 28 3.7
SB_8103| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
SB_47012| Best HMM Match : ScdA_N (HMM E-Value=5.3) 27 4.9
SB_48433| Best HMM Match : Ion_trans (HMM E-Value=6.1e-26) 27 6.5
SB_56699| Best HMM Match : ResIII (HMM E-Value=0.053) 27 6.5
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_31229| Best HMM Match : TP2 (HMM E-Value=1.7) 27 8.6
SB_15632| Best HMM Match : CBM_5_12 (HMM E-Value=2.9) 27 8.6
SB_4087| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_3096| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_58114| Best HMM Match : DUF1478 (HMM E-Value=3) 27 8.6
SB_51131| Best HMM Match : ResIII (HMM E-Value=0.36) 27 8.6
SB_14689| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 84.2 bits (199), Expect = 4e-17
Identities = 36/47 (76%), Positives = 45/47 (95%)
Frame = -1
Query: 426 SGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 286
+GDAA+V ++PSKP+CVE+F EFPPLGRFAVRDM+QTVAVGVIK+V+
Sbjct: 255 TGDAAMVEMIPSKPMCVETFTEFPPLGRFAVRDMKQTVAVGVIKSVD 301
>SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)
Length = 80
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = -1
Query: 414 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 298
A V L S+P+CVE ++++ LGRF +R T+A GVI
Sbjct: 40 AEVELQTSRPVCVELYKDYKDLGRFMLRYGGNTIAAGVI 78
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 31.1 bits (67), Expect = 0.40
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 414 AIVNLVPSKPLCVESFQEFPPLGRFAVRD 328
AI L +C+E F +F +GRF +RD
Sbjct: 517 AIARLETQGVICIEKFSDFQQMGRFTLRD 545
>SB_57396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 757
Score = 30.3 bits (65), Expect = 0.70
Identities = 18/73 (24%), Positives = 36/73 (49%)
Frame = -3
Query: 370 LPGIPTPRSFRRA*HEADGRRRCNKGCELQGSRWWQSHQSCRKSHQGQEVASTVNSSVLY 191
L G+P+ F++ H++ RRR + E+ GSR + SH+ Q +V+ +
Sbjct: 166 LRGLPSDNVFKKGMHKSLRRRREDVPDEVDGSRGFDVDNEEMVSHENQVFNKSVDLNPGE 225
Query: 190 TTAILHSPKGVQK 152
+LH + +++
Sbjct: 226 FANLLHRNRNIKE 238
>SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 903
Score = 29.5 bits (63), Expect = 1.2
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -1
Query: 408 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 319
+++VP++P CV SF EF + +RD+ Q
Sbjct: 380 MSVVPAQPQCVASFPEFCAVSVSYIRDLSQ 409
>SB_30566| Best HMM Match : zf-C4_Topoisom (HMM E-Value=0.38)
Length = 597
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +3
Query: 330 HARRNDRGVGIPGRTPHTGAWR--EPG*QWR 416
+A+ GV + GR P G WR PG +WR
Sbjct: 19 YAKAVPSGVKLVGRNPRYGEWRHKRPGYEWR 49
>SB_50181| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)
Length = 503
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -3
Query: 256 QSCRKSHQGQEVASTVNSSVLYTTAILHSPKGVQKERRATN 134
+S +KS + A T+NS+ +YT + P+ V + TN
Sbjct: 238 KSAKKSKKSDATAPTINSTGIYTQLVDLLPRNVVLDDEVTN 278
>SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)
Length = 1097
Score = 28.3 bits (60), Expect = 2.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 302 TPTATVCLMSRTAKRPRGGNSWKDSTHRGLEG 397
TP+ VCL+SR + PR W R + G
Sbjct: 282 TPSLYVCLLSRAHRDPRLSTGWSPYEKREVRG 313
>SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 904
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -1
Query: 408 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 319
++++P++P CV SF EF + +RD+ Q
Sbjct: 381 MSVMPAQPQCVASFPEFCAVSVSYIRDLLQ 410
>SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11)
Length = 1175
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 408 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 319
+++ P++P CV SF EF + +RD+ Q
Sbjct: 385 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 414
>SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10)
Length = 549
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 408 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 319
+++ P++P CV SF EF + +RD+ Q
Sbjct: 389 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 418
>SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
Length = 1131
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 408 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 319
+++ P++P CV SF EF + +RD+ Q
Sbjct: 1044 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 1073
>SB_23935| Best HMM Match : bZIP_Maf (HMM E-Value=0.76)
Length = 715
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -3
Query: 232 GQEVASTVNSSVLYTTAILHSPKGVQKERRATN 134
G+ V +T+N + L+++ I HSP Q RA+N
Sbjct: 97 GESVHTTLNDTPLHSSVIDHSPMYPQDTIRASN 129
>SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 887
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 408 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 319
+++ P++P CV SF EF + +RD+ Q
Sbjct: 532 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 561
>SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20)
Length = 1285
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 408 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 319
+++ P++P CV SF EF + +RD+ Q
Sbjct: 1111 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 1140
>SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29)
Length = 605
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 408 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 319
+++ P++P CV SF EF + +RD+ Q
Sbjct: 184 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 213
>SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 988
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 408 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 319
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 408 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 319
+++ P++P CV SF EF + +RD+ Q
Sbjct: 87 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 116
>SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 408 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 319
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 408 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 319
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
Length = 496
Score = 27.9 bits (59), Expect = 3.7
Identities = 18/62 (29%), Positives = 26/62 (41%)
Frame = -2
Query: 416 PPLSTWFPPSPCVWSPSRNSHPSVVSPCVT*GRRSPSV**RL*TSRKQVVAKSPKLPKKP 237
PP +PPSP + PS + +P R P + R S + + P+ P P
Sbjct: 293 PPSPPRYPPSPPRYPPSLHRYPQSPLRYPPSPIRYPPLPSRYPPSPPRYPSSHPRYPPSP 352
Query: 236 PR 231
PR
Sbjct: 353 PR 354
>SB_8103| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1071
Score = 27.5 bits (58), Expect = 4.9
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +3
Query: 330 HARRNDRGVGIPGRTPHTGAWR--EPG*QWR 416
+A++ GV + R+P G WR +PG +WR
Sbjct: 657 YAKKVPSGVKLVERSPRYGEWRHKKPGYEWR 687
>SB_47012| Best HMM Match : ScdA_N (HMM E-Value=5.3)
Length = 840
Score = 27.5 bits (58), Expect = 4.9
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +3
Query: 330 HARRNDRGVGIPGRTPHTGAWR--EPG*QWR 416
+A++ GV + R+P G WR +PG +WR
Sbjct: 659 YAKKVPSGVKLVERSPRYGEWRHKKPGYEWR 689
>SB_48433| Best HMM Match : Ion_trans (HMM E-Value=6.1e-26)
Length = 1344
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +1
Query: 286 VHSLYYTDG---DRLPHVTHGETTEGWEFLEGLHTQGLG 393
VH YT+G D++ VT GET W + G+ +G
Sbjct: 734 VHIWSYTNGIDMDQVGLVTSGETVHIWSYTNGIDKDQVG 772
>SB_56699| Best HMM Match : ResIII (HMM E-Value=0.053)
Length = 314
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 324 SCHARRNDRGVGIPGRTPHTGAWR--EPG*QWR 416
S +A+ GV + R P G WR +PG +WR
Sbjct: 71 SIYAKAVPSGVKLVERNPRYGEWRHKKPGYEWR 103
>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 650
Score = 26.6 bits (56), Expect = 8.6
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -2
Query: 416 PPLSTWFPPSPCVWSPSRNSHP 351
PP ++PP+P + P++ S+P
Sbjct: 180 PPTQPFYPPTPSSYPPTQPSYP 201
>SB_31229| Best HMM Match : TP2 (HMM E-Value=1.7)
Length = 676
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -3
Query: 259 HQSCRKSHQGQEVASTVNSSVLYTTAILHSPKGVQ 155
H ++ G+E+ S ++ SVL+ AIL P+ +Q
Sbjct: 537 HTFQSETQLGKEITSEISRSVLWIVAILLVPQALQ 571
>SB_15632| Best HMM Match : CBM_5_12 (HMM E-Value=2.9)
Length = 748
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = +3
Query: 330 HARRNDRGVGIPGRTPHTGAWR--EPG*QWR 416
+A+ GV + R P G WR PG +WR
Sbjct: 640 YAKEISNGVKLVERNPRYGEWRHKRPGYEWR 670
>SB_4087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1095
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = +3
Query: 330 HARRNDRGVGIPGRTPHTGAWR--EPG*QWR 416
+A+ GV + R P G WR PG +WR
Sbjct: 640 YAKEISNGVKLVERNPRYGEWRHKRPGYEWR 670
>SB_3096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 994
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = +3
Query: 330 HARRNDRGVGIPGRTPHTGAWR--EPG*QWR 416
+A+ GV + R P G WR PG +WR
Sbjct: 551 YAKAEPSGVKLVERNPRYGEWRHKRPGYEWR 581
>SB_58114| Best HMM Match : DUF1478 (HMM E-Value=3)
Length = 231
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 408 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 319
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFFAVSVSYIRDILQ 32
>SB_51131| Best HMM Match : ResIII (HMM E-Value=0.36)
Length = 738
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +3
Query: 330 HARRNDRGVGIPGRTPHTGAWR--EPG*QWR 416
+A+ GV I R P G WR +PG +WR
Sbjct: 447 YAKAVPSGVKIVERNPRYGEWRHKKPGYEWR 477
>SB_14689| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1900
Score = 26.6 bits (56), Expect = 8.6
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +3
Query: 195 KTELLTVLATSCPWWLFRQL 254
+ ELL+++ S PWWL +++
Sbjct: 1765 QVELLSLIEESLPWWLLKRV 1784
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,046,384
Number of Sequences: 59808
Number of extensions: 282394
Number of successful extensions: 1022
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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