Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_D01
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   3.5  
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    26   3.5  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    25   6.1  
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.1  
SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual    25   8.1  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    25   8.1  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   8.1  
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    25   8.1  
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    25   8.1  

>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +1

Query: 130 VFLEKTSKGIKQYNIRPIDPWFISSLDVLADEDMRLLFH 246
           +FLE+ ++ +K+Y  + ++P   +   VL+D  M LL H
Sbjct: 3   LFLEEHAEYLKRYLEQALEPISDADASVLSDYAMALLRH 41


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 306 VNTKIKDFLVLQSGHGHIIKVKQQTHILVSQD 211
           +NT   DFL +Q     ++  K+Q  +++SQ+
Sbjct: 521 INTNHPDFLGVQGAMAVVLSRKEQNRLMLSQE 552


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = -1

Query: 212 TSKDDMNQGSMGRILYCLMPLLVFSRNTFVD*PKQSKSVMSHGTNNDPSQKMLLTNVRKN 33
           TSK  +N      +L   +P    S+ +F D  +++        +NDP+ +ML  N +  
Sbjct: 320 TSKVVLNLNDPKLLLQPQLPKKEDSQRSFADTHQRNSLAWKFNISNDPAYEMLKQNHQSK 379

Query: 32  I 30
           +
Sbjct: 380 V 380


>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 251 LK*NNKRISSSARTSKDDMNQGSMGR 174
           LK +N+R+ +  RT K ++N  S+G+
Sbjct: 224 LKNDNERLENEHRTEKLNVNANSLGK 249


>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 77  NDPSQKMLLTNVRKNII 27
           N P+ K LLTN R NI+
Sbjct: 123 NTPASKRLLTNERSNIL 139


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 107 SKSVMSHGTNNDPSQKMLLTNVRKNIIFTGFILH 6
           +K+ MSH +N     ++ L  ++KN + TG   H
Sbjct: 161 AKAYMSHISNLRKKSRLNLQEIQKNSLHTGNTSH 194


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 16  NPVKIIFFLT-FVKSIFCDGSLLVPCDMTDL 105
           NP+ I   +T F+K + C+   + PCD+ ++
Sbjct: 332 NPLSIQRTITHFIKKLVCNECSMHPCDIEEI 362


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -1

Query: 395 NFDFSPNSITMFPTIFRSAFVFNTTDLVFVSIRKSKIFWFFN 270
           NFD  P+++T        A +    D+V +  +  ++F FFN
Sbjct: 268 NFDGPPSAVTFSSIGGLQAQIAQIRDIVELPFQNPELFKFFN 309


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 188 GSMGRILYCLMPLLVFSRNT 129
           GS  RI+Y L+  L+FSR T
Sbjct: 579 GSFERIVYALLRTLLFSRAT 598


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,163,668
Number of Sequences: 5004
Number of extensions: 44652
Number of successful extensions: 124
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)