Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_D01
         (488 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72270.1 68414.m08355 expressed protein                             30   0.96 
At2g40810.2 68415.m05035 WD-40 repeat protein family similar to ...    27   5.1  
At2g40810.1 68415.m05034 WD-40 repeat protein family similar to ...    27   5.1  
At4g04695.1 68417.m00689 calcium-dependent protein kinase, putat...    27   6.8  
At2g05250.1 68415.m00553 DNAJ heat shock N-terminal domain-conta...    27   6.8  
At2g05230.1 68415.m00551 DNAJ heat shock N-terminal domain-conta...    27   6.8  
At3g13230.1 68416.m01665 expressed protein                             27   9.0  

>At1g72270.1 68414.m08355 expressed protein
          Length = 2777

 Score = 29.9 bits (64), Expect = 0.96
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +1

Query: 178 PIDPWFISSLDVLADEDMRLLFHFNNVSVTGLKNQKIFDFRIDTKTKSVVLKTKAD 345
           P+ PW ++  D+ +DE+      FNNV  TGL + +I   ++  + + +  K K +
Sbjct: 273 PLLPWLVTPYDLTSDEE-SFREEFNNVVHTGLHSVEIAFAKVRARWRILDKKWKPE 327


>At2g40810.2 68415.m05035 WD-40 repeat protein family similar to
           Gsa12p(GI:18307769)[Pichia pastoris]; contains 3 Pfam
           PF00400: WD domain, G-beta repeats
          Length = 393

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +1

Query: 109 CLGQSTKVFLEKTSKGIKQYNIRPIDPWFISSLDVLADEDMRLLFHFNNVSVTG 270
           C  Q +  F   TS G + YN  P    F   L     + + +LF  N +++ G
Sbjct: 36  CWNQDSSCFAAGTSHGFRIYNCEPFKETFRRELKDGGFKIVEMLFRSNILALVG 89


>At2g40810.1 68415.m05034 WD-40 repeat protein family similar to
           Gsa12p(GI:18307769)[Pichia pastoris]; contains 3 Pfam
           PF00400: WD domain, G-beta repeats
          Length = 393

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +1

Query: 109 CLGQSTKVFLEKTSKGIKQYNIRPIDPWFISSLDVLADEDMRLLFHFNNVSVTG 270
           C  Q +  F   TS G + YN  P    F   L     + + +LF  N +++ G
Sbjct: 36  CWNQDSSCFAAGTSHGFRIYNCEPFKETFRRELKDGGFKIVEMLFRSNILALVG 89


>At4g04695.1 68417.m00689 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase [Lycopersicon esculentum]
           gi|19171502|emb|CAC87494; contains protein kinase
           domain, Pfam:PF00069; contains EF hand domain
           (calcium-binding EF-hand), Pfam:PF00036,
           INTERPRO:IPR002048
          Length = 484

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 20/80 (25%), Positives = 39/80 (48%)
 Frame = +1

Query: 244 HFNNVSVTGLKNQKIFDFRIDTKTKSVVLKTKADLNIVGNIVIELGEKSKLFSGTYTAQA 423
           H+  V +  LK +   +F + +  K+  +K    ++   ++ IE GE  + F+G+    A
Sbjct: 148 HYMGVMLRDLKPE---NFLLSSTDKNATVKA---IDFGCSVFIEEGEVHRKFAGSAYYIA 201

Query: 424 TSVGAAKYGYDLKMDSTGVL 483
             V   KYG +  + S G++
Sbjct: 202 PEVLQGKYGKEADIWSAGII 221


>At2g05250.1 68415.m00553 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 706

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
 Frame = +1

Query: 115 GQSTKVFLEKTSKGIKQYNIRPIDPWFISSLDVLADEDMRLLF-----HFNNVSVTGLKN 279
           G+ +KVF+E  + G  +  +R +     ++ D   D+D +L        ++  SV   + 
Sbjct: 359 GKKSKVFMEAAANGFVENPLRSVSVSKTANTDAKMDQDYKLHIQSSTRRWSAASVLDTRK 418

Query: 280 QKIFDFRIDTKTKSVVLKTKADLNIVGNIVIELGEKSKL 396
             I   R D K +  +++   +          L EK+ L
Sbjct: 419 PLIQKARTDIKQRLEMMRLALEAAAAAEDATPLDEKTVL 457


>At2g05230.1 68415.m00551 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 706

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
 Frame = +1

Query: 115 GQSTKVFLEKTSKGIKQYNIRPIDPWFISSLDVLADEDMRLLF-----HFNNVSVTGLKN 279
           G+ +KVF+E  + G  +  +R +     ++ D   D+D +L        ++  SV   + 
Sbjct: 359 GKKSKVFMEAAANGFVENPLRSVSVSKTANTDAKMDQDYKLHIQSSTRRWSAASVLDTRK 418

Query: 280 QKIFDFRIDTKTKSVVLKTKADLNIVGNIVIELGEKSKL 396
             I   R D K +  +++   +          L EK+ L
Sbjct: 419 PLIQKARTDIKQRLEMMRLALEAAAAAEDATPLDEKTVL 457


>At3g13230.1 68416.m01665 expressed protein
          Length = 215

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 265 TGLKNQKIFDFRIDTKTKSVVLKTKADLNIVGNI 366
           T + +Q   D R++ K + V LKT+AD   + N+
Sbjct: 62  TPIYDQMKVDIRMNLKARKVELKTRADTPDISNL 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,113,836
Number of Sequences: 28952
Number of extensions: 224204
Number of successful extensions: 519
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)