Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_C22
         (554 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24121| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-08)                 29   1.9  
SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_19176| Best HMM Match : YGGT (HMM E-Value=1.1)                      27   7.8  

>SB_24121| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-08)
          Length = 320

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -2

Query: 343 IVRVNSIFASEINFVVDTVHSVSHAICDSGDFSIFICFCIEVSGF 209
           I++ N IF S INF+V   H    A  D   F++F+  C+ ++ +
Sbjct: 82  ILQPNGIFRS-INFLVQDNHCYKSAADDIRPFTVFLYRCVSLASW 125


>SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1659

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
 Frame = +2

Query: 74  VIRN-NNYEKQVLKSDVHNP-YQLAIDYQTSTIFFSLSPEVNGKTVLKSAYFNTKTNEYG 247
           V+R+ NNY    +++ V    +  A+  + +    S +P V G TVL S+Y +   + Y 
Sbjct: 262 VVRDWNNYIAMRVETLVEQVLFTAALQMRANFSVVSGAPFVQGDTVLLSSYVSNHLSGYR 321

Query: 248 EIAG-ITNGMANAVDSIDHKVYLGGKDGVYTY---DYTTKKATNLGITD 382
            I G IT  +A+ +     +  LG K   +     D  T K T L   D
Sbjct: 322 AIDGTITWKLASFLSYKSSQSQLGSKSADHVTSLGDELTIKFTELAYID 370


>SB_19176| Best HMM Match : YGGT (HMM E-Value=1.1)
          Length = 409

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
 Frame = -2

Query: 358 FLGSVIVRVNSIFAS-EINFVVDTVHSVSHAICDSGDFSIFICFCIE--VSGF*NSFTVH 188
           + G  I  VN +F S E++   D     SH+   + +    I +C E  +  +   +  +
Sbjct: 237 YFGDFISAVNVVFVSIELDLEYDLSLKSSHSALAAANLFFVIYYCAEQSIKLWALGWQRY 296

Query: 187 FGR*TEKYCAGLVVDC*LVRIVHVAL 110
                  YC G+ V   ++ I+H++L
Sbjct: 297 VSFKGNLYCGGVTVLLVVIEIIHLSL 322


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,929,423
Number of Sequences: 59808
Number of extensions: 343717
Number of successful extensions: 803
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)