Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_C21
         (455 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   5.5  
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    25   5.5  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    25   5.5  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    24   9.6  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    24   9.6  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    24   9.6  

>SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 72

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 151 CGINGPEDWAAHNLTIPNTCCT 216
           C  +GP  W  H+ T+   C T
Sbjct: 3   CPTHGPTTWNPHSCTVVEKCIT 24


>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +1

Query: 4   ELAVGIAGYVKHKDLETSIVKHLNETIAQYPTNKDVARTFDIMQTDLQ 147
           ELA   A      D  T+++K L + +  YPT   +    D +++ L+
Sbjct: 118 ELAKLTASQCTRLDSSTALIKQLLDLVQNYPTFNQLNVLHDRLESSLK 165


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 357 SDAEPDSSEHYSDILEVS 304
           S+AEP S E Y D++E +
Sbjct: 462 SEAEPVSEEEYKDVMETA 479


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1019

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -3

Query: 396  QAAGEYHTQELN*SDAEPDSSEHYSDILEVSDQFVQA 286
            +   EY   + + SD E + SE YS+     D + ++
Sbjct: 945  EEVSEYEASDADPSDEEEEESEEYSEDASEEDGYSES 981


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 122 STSCKPTYNVAVSTAPKTGQRTT 190
           STSC P   + + T P T   TT
Sbjct: 185 STSCPPPTTILIVTVPTTTTTTT 207


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 114 SDILVCRVLRDCLVEVFHDRCLEVL 40
           + + +C+++   L EVF DR   VL
Sbjct: 395 NQVELCKIIHRMLTEVFEDRTSSVL 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,772,827
Number of Sequences: 5004
Number of extensions: 32719
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)