Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_C21
(455 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0195 - 1409820-1409966,1410304-1410360,1410774-1410828,141... 30 1.0
02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942 29 2.3
09_04_0072 + 14323449-14324274,14324351-14324447,14325175-143252... 27 5.4
06_01_0023 + 227014-227166,227893-228001,228096-228157,228284-22... 27 5.4
02_03_0278 - 17238075-17238998 27 5.4
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733... 27 7.2
05_05_0225 - 23437454-23437793,23438348-23440573,23440771-23441603 27 7.2
11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200... 27 9.5
>05_01_0195 -
1409820-1409966,1410304-1410360,1410774-1410828,
1410902-1411002,1411051-1411205,1411395-1411459,
1411545-1411595,1411817-1411893,1412153-1412262,
1412355-1412403,1412528-1412572,1412689-1412813,
1413087-1413228,1413336-1413446
Length = 429
Score = 29.9 bits (64), Expect = 1.0
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Frame = +1
Query: 40 KDLETSIVKHLNETIAQYPTNKDVARTF--DI----MQTDLQCCGINGPEDWAAHNLTIP 201
+ + S+ K ETIA + D + F D+ + D G+ PE++ L
Sbjct: 36 EQFKESVHKFAQETIAPHAAAIDASNHFPKDVNLWKLMGDFNLHGLTAPEEYGGMGLGYM 95
Query: 202 NTCCTGQEINDGVLVACTKDTPGFHTKGCLNELVAH 309
C +EI+ + G H+ C+N+LV H
Sbjct: 96 YHCIAMEEISRAS--GSVGLSYGAHSNLCINQLVRH 129
>02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942
Length = 379
Score = 28.7 bits (61), Expect = 2.3
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -2
Query: 304 RPVRSGSL*YGNRVC--P*CKRPEHHR*SLVRCSKC*GWSGCA 182
RP+ SG+ R+C P C RPE + RCS C G C+
Sbjct: 290 RPLASGAGAAALRMCSQPTCGRPETRKHEFRRCSVCSGVIYCS 332
>09_04_0072 + 14323449-14324274,14324351-14324447,14325175-14325277,
14325359-14325412,14325495-14325569,14325597-14325650,
14325687-14325755,14325840-14325923,14326115-14326312,
14326428-14326927,14327011-14327140,14328226-14328317,
14328776-14328954,14329114-14329316,14329398-14329499,
14330047-14330209,14330690-14330979,14331088-14331225,
14331311-14331390,14331510-14331606,14331685-14331814,
14331921-14332162
Length = 1301
Score = 27.5 bits (58), Expect = 5.4
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -3
Query: 276 METGCVLSASDQNTIV--DLLSGAASVRDGQVVRCPV 172
MET VLS++ +N++V D L S DGQ + V
Sbjct: 1113 METASVLSSATKNSLVALDELGRGTSTSDGQAIAASV 1149
>06_01_0023 +
227014-227166,227893-228001,228096-228157,228284-228493,
228609-228696,228774-228936,229037-229235,229456-229653,
229887-230018,230182-230302,230453-230563,230710-230779,
230880-231063,231137-231346
Length = 669
Score = 27.5 bits (58), Expect = 5.4
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = +1
Query: 58 IVKHLNETIAQYPTNKDVARTFDIM---QTDLQC-CGINGPEDW 177
+ + L +T++Q + K T M Q +QC CG+N EDW
Sbjct: 439 VARFLMKTVSQLASGKQPVGTTAYMGNIQYLMQCKCGVNTAEDW 482
>02_03_0278 - 17238075-17238998
Length = 307
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 166 PEDWAAHNLTIPNTCCTGQEINDGVLVACTKDTP 267
P+D A + P CC+ +DG +AC TP
Sbjct: 272 PQDPADGWMIRPEDCCSFDLASDGFWIACETHTP 305
>05_05_0348 +
24271764-24271898,24273055-24273144,24273205-24273303,
24273725-24273826,24273912-24274088,24274193-24274398,
24274491-24274575,24274641-24274798,24274873-24274948,
24275117-24275245,24275313-24275457,24275561-24275691,
24276183-24276335,24276447-24276636,24277006-24277139,
24277248-24277406,24277659-24277964,24278040-24278216,
24278446-24278529,24278592-24278822,24278913-24279002,
24279090-24279211,24279293-24279448,24279477-24279635,
24279705-24279765,24280004-24280138,24280384-24280471,
24280548-24280620,24280883-24280994,24281691-24281711
Length = 1327
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = -3
Query: 381 YHTQELN*SDAEPDSSEHYSDILEVSDQFVQAAFSMETGCVLSASDQNTIVDLLSGAAS 205
+H ++L P+ D+++V D+ ++ AF G + ASD + + AAS
Sbjct: 675 HHLRKLQEKVKTPEGVPRLFDLVKVKDEKLKLAFFATLGNTIVASDLDQATRIAYSAAS 733
>05_05_0225 - 23437454-23437793,23438348-23440573,23440771-23441603
Length = 1132
Score = 27.1 bits (57), Expect = 7.2
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = -3
Query: 171 FGAVDTATL*VGLHDVERSSDILVCRVLRDCLVEVFHDRCLEVLVLHVTSDTDS 10
FG V+ AT + + + + C VL +C+ + + L+VL+LH D DS
Sbjct: 542 FGNVEDATPPTNMR-LSQVRTLAFCGVL-NCMPSITGFQLLKVLILHFCGDEDS 593
>11_04_0236 + 15215386-15216197,15216854-15218888,15219131-15220017,
15222420-15226194
Length = 2502
Score = 26.6 bits (56), Expect = 9.5
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = -3
Query: 336 SEHYSDILEVSDQFVQAAFSMETGCVLSASDQNTIVDLLSGAA 208
SEH +E + A +++T ++S+S+QN VD++SG +
Sbjct: 1670 SEHLQRNMETLGSLLGAVSNLKTLSIVSSSNQN--VDMVSGTS 1710
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,210,075
Number of Sequences: 37544
Number of extensions: 239182
Number of successful extensions: 629
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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