Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_C20
(227 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.002
SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014) 36 0.005
SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.028
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 1.8
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 27 2.4
SB_22048| Best HMM Match : RHS_repeat (HMM E-Value=0.00058) 27 2.4
SB_6736| Best HMM Match : efhand (HMM E-Value=2.6e-21) 27 3.2
SB_40959| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.2
SB_39386| Best HMM Match : RVT_1 (HMM E-Value=7.1e-28) 26 5.5
SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.5
SB_24711| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.5
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.3
SB_23558| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.3
SB_2086| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-07) 25 7.3
SB_59377| Best HMM Match : Exo_endo_phos (HMM E-Value=1.7) 25 9.7
SB_576| Best HMM Match : RVT_1 (HMM E-Value=0) 25 9.7
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 25 9.7
SB_31163| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.7
SB_29863| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.7
SB_5603| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.7
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/24 (66%), Positives = 21/24 (87%)
Frame = +1
Query: 154 KDFLAGGISAAVSKTAVAPIERVK 225
K LAGGI+ AVS+T+V+P+ERVK
Sbjct: 36 KHLLAGGIAGAVSRTSVSPLERVK 59
>SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014)
Length = 76
Score = 35.9 bits (79), Expect = 0.005
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +1
Query: 121 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVK 225
MS + F ++F G +A +SKTA APIERVK
Sbjct: 1 MSGKKQNLHFVENFALSGAAAIISKTAAAPIERVK 35
>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 33.5 bits (73), Expect = 0.028
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +1
Query: 148 FAKDFLAGGISAAVSKTAVAPIERVK 225
F ++F G +A +SKTA APIERVK
Sbjct: 9 FVENFGLSGAAAIISKTAAAPIERVK 34
>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 169 GGISAAVSKTAVAPIERVK 225
GG A VS+TA AP++R+K
Sbjct: 143 GGALAGVSRTATAPLDRLK 161
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 142 VAFAKDFLAGGISAAVSKTAVAPIERVK 225
+ + + FL GG SA ++++ +P+E VK
Sbjct: 56 ITWFQSFLCGGTSAVLARSLTSPLEVVK 83
>SB_22048| Best HMM Match : RHS_repeat (HMM E-Value=0.00058)
Length = 820
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 78 QGRTSAHTEWKNHEKRTPD 22
QGRT HT NHEK T +
Sbjct: 675 QGRTGGHTASDNHEKGTKE 693
>SB_6736| Best HMM Match : efhand (HMM E-Value=2.6e-21)
Length = 198
Score = 26.6 bits (56), Expect = 3.2
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 166 AGGISAAVSKTAVAPIERVK 225
AGG++ S+T AP+E++K
Sbjct: 175 AGGVAGVASRTLTAPLEKMK 194
>SB_40959| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 94 GGYLRTRKDFGTHGMEKPRKTNPR 23
GG R++ GT G E PR+ +PR
Sbjct: 47 GGNGTERRNIGTSGEETPRQRSPR 70
>SB_39386| Best HMM Match : RVT_1 (HMM E-Value=7.1e-28)
Length = 1239
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 53 SVCAEVLPCPQVSTQRGPHXRTKCRISPIQSR 148
S C +VLPCPQ+ P+ R++ R
Sbjct: 149 SYC-DVLPCPQIGDHEAPYVCMNIRVTRFTPR 179
>SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1105
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 150 ERDWIGEIRHFVRXCGPLWVDTCGQGRTSAHTEWKNHEKR 31
E+ W+G++RH V P+ G S +W N+E++
Sbjct: 554 EQQWLGDMRHNVDDVLPVGE---GISEASRTPDWNNNEQK 590
>SB_24711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 163 ESLWRTRLDRRDSTFCSXMWSSLGGYLRTRKDFGTHG 53
E+L R + DRR T GG+++ RK F +G
Sbjct: 96 ENLIRFKSDRRGKTLIQLRNLGKGGWIKPRKLFNENG 132
>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = -1
Query: 92 WI-LADKEGLRHTRNGKTTKNEP 27
W+ LAD G+ +T K+TKN+P
Sbjct: 509 WVALADGSGVLNTSTPKSTKNKP 531
>SB_23558| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 25.4 bits (53), Expect = 7.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 80 DKEGLRHTRNGKTTKNEPP 24
+ EGL H R + K+EPP
Sbjct: 706 ESEGLEHARTAEGDKDEPP 724
>SB_2086| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-07)
Length = 827
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 59 CAEVLPCPQVSTQRGPHXR 115
CA +P PQ +QRGP R
Sbjct: 161 CAPGMPLPQGHSQRGPEKR 179
>SB_59377| Best HMM Match : Exo_endo_phos (HMM E-Value=1.7)
Length = 839
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 53 SVCAEVLPCPQVSTQRGPHXRTKCRISPIQSR 148
S C +VLPCPQ+ P+ R++ R
Sbjct: 382 SYC-DVLPCPQIGDHDAPYVCMNIRVTRFTPR 412
>SB_576| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1444
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 53 SVCAEVLPCPQVSTQRGPHXRTKCRISPIQSR 148
S C +VLPCPQ+ P+ R++ R
Sbjct: 497 SYC-DVLPCPQIGDHDAPYVCMNIRVTRFTPR 527
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 160 FLAGGISAAVSKTAVAPIERVK 225
F+ GG++ AVS+T P++ V+
Sbjct: 176 FVCGGVAGAVSQTIAYPLDVVR 197
>SB_31163| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 166 PESLWRTRLDRRDSTFCSXMWSSLGGYLRTRKDFG 62
P+S +T DR S F + +W+SL ++R G
Sbjct: 98 PKSRTKTYGDRSFSNFAAKLWNSLPLHIRNTDCLG 132
>SB_29863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 590
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 53 SVCAEVLPCPQVSTQRGPHXRTKCRISPIQSR 148
S C +VLPCPQ+ P+ R++ R
Sbjct: 371 SYC-DVLPCPQIGDHDAPYVCMNIRVTRFTPR 401
>SB_5603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 53 SVCAEVLPCPQVSTQRGPHXRTKCRISPIQSR 148
S C +VLPCPQ+ P+ R++ R
Sbjct: 62 SYC-DVLPCPQIGDHDAPYVCMNIRVTRFTPR 92
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,295,261
Number of Sequences: 59808
Number of extensions: 127330
Number of successful extensions: 545
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 16,821,457
effective HSP length: 53
effective length of database: 13,651,633
effective search space used: 300335926
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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