Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_C20
         (227 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    65   9e-14
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    65   9e-14
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    20   3.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    19   5.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    19   5.9  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           19   7.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    19   7.8  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    19   7.8  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 65.3 bits (152), Expect = 9e-14
 Identities = 30/35 (85%), Positives = 33/35 (94%)
 Frame = +1

Query: 121 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVK 225
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVK
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVK 35


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 65.3 bits (152), Expect = 9e-14
 Identities = 30/35 (85%), Positives = 33/35 (94%)
 Frame = +1

Query: 121 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVK 225
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVK
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVK 35


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 3.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 56  RNGKTTKNEP 27
           RNGKTT+  P
Sbjct: 382 RNGKTTEENP 391


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 19.4 bits (38), Expect = 5.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 90  DTCGQGRTSA 61
           DTC QGR +A
Sbjct: 347 DTCCQGRATA 356


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 19.4 bits (38), Expect = 5.9
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 15  IKNRGFVFRGFSIPCVPKSFLVRKYPP 95
           I+NR  +  G S P   +     K+PP
Sbjct: 383 IRNRSGLVSGSSTPGTGREHDPAKFPP 409


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 19.0 bits (37), Expect = 7.8
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 55  RVCRSPSLSASIHPKRTTXSNKMSNLADPV 144
           RV R+      +H  +TT +  +S   DP+
Sbjct: 76  RVIRAKLGKVGVHCMKTTQAVVVSLYEDPI 105


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 19.0 bits (37), Expect = 7.8
 Identities = 9/28 (32%), Positives = 11/28 (39%)
 Frame = -1

Query: 173 PPARKSLANATGSARFDILFDXVVLFGW 90
           P  R  LAN  G+    +     V F W
Sbjct: 591 PFGRFKLANTDGTEEDALNLSSAVWFAW 618


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 19.0 bits (37), Expect = 7.8
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -1

Query: 173 PPARKSLANATGSARFD 123
           PP    + NAT +  FD
Sbjct: 641 PPIMPRVQNATDTTNFD 657


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,396
Number of Sequences: 438
Number of extensions: 1022
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3659655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)