Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_C18
(399 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe... 30 0.12
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch... 25 3.3
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi... 25 3.3
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch... 25 3.3
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 25 4.3
SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme Spa1|Schi... 25 5.7
SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch... 24 7.6
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa... 24 7.6
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 24 10.0
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 24 10.0
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch... 24 10.0
>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 270
Score = 30.3 bits (65), Expect = 0.12
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +2
Query: 11 VIMTSGRIIIYGGRGALGSACVNHFKSSNWWVANIDLNPNESADFNVAVPKD-ASWVQQE 187
+I + + G + + N + W V N++L+P S+ F P D A V QE
Sbjct: 62 IIRAGENVFVCGIKAEIAEPFENS-PNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQE 120
Query: 188 QHVVNELSNALQGQKV 235
H + SN + Q +
Sbjct: 121 LHQTLQQSNLINLQSL 136
>SPCC1020.09 |||WD repeat protein, human WDR79
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 399
Score = 25.4 bits (53), Expect = 3.3
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Frame = +2
Query: 182 QEQHVVNELS---NALQGQKVNAVI-CVAGGWAGGNAAKDLSKQADLMWRQSVWSSTIAA 349
+E HV N +Q +N I CV G KD S++ D + +W+ T++A
Sbjct: 334 EETHVTGNYDLTVNTVQANPINMQIKCVCYGNRIYKYEKDESEEEDESKEKDLWTGTVSA 393
>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 965
Score = 25.4 bits (53), Expect = 3.3
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = -1
Query: 102 HQLEDLK*LTQADPSAPLPPYIMILPLVIITSI 4
H+L+ ++ + AD L PY++ L + ++ I
Sbjct: 166 HRLDIIEYILNADKETDLKPYVLELAMTVVLDI 198
>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 3.3
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 113 IDLNPNESADFNVAVP-KDASWVQQEQHVVNEL 208
+ L PN FN+ +P + A+ +QQ V+ L
Sbjct: 76 VSLTPNPVISFNIKIPSRTANAIQQSNRVIVHL 108
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 25.0 bits (52), Expect = 4.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 125 PNESADFNVAVPKDASWVQQEQHVVNEL 208
PNE D A KD V++EQ V ++
Sbjct: 852 PNEVDDAEAADEKDGKLVEEEQRVTGDV 879
>SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme
Spa1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 226
Score = 24.6 bits (51), Expect = 5.7
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 168 PRGYNRSNM*STN*VTLCKVRK*MLLFASLVVGQAE 275
PRG N ++ N + LC + M ++ S G AE
Sbjct: 29 PRGQNHTHGRRRNTLALCTTKDQMFVYGSTPAGGAE 64
>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 234
Score = 24.2 bits (50), Expect = 7.6
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +2
Query: 65 SACVNHFKSSNWWVA--NIDLNPNESADFNVAVPKDASWVQQEQHVVNELSN 214
S+ N SS+ V+ N D NPN + AVP D+ ++H + S+
Sbjct: 124 SSTTNSLSSSSSSVSHMNQDANPNSTVLTFTAVPYDSCLPAPDRHTPSSASS 175
>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 24.2 bits (50), Expect = 7.6
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -3
Query: 229 LTLQSVT*FVDYMLLLLYPRGIFRHGNV 146
L+L+S+ +D L +PRGI +HG+V
Sbjct: 168 LSLKSLQKPIDIFLSHDWPRGIEQHGDV 195
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 23.8 bits (49), Expect = 10.0
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 113 IDLNPNESADFNVAVPKDASWVQQEQHVVNELSNAL 220
I + NES+D ++P SW+ V+ ++N L
Sbjct: 811 IPMPSNESSDLVFSIPGITSWLDPSLPVIVLIANYL 846
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 23.8 bits (49), Expect = 10.0
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +2
Query: 143 FNVAVPKDASWVQQEQHVVNELSNALQGQKVNAVICVA 256
FNVA + W+ + +NA G ++++ CVA
Sbjct: 1294 FNVA-ENELGWINEHMAKYKLDNNAFSGLRLSSAACVA 1330
>SPAC18G6.07c |mra1||ribosome biogenesis protein
Mra1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 359
Score = 23.8 bits (49), Expect = 10.0
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 66 LLALITLNLPTGGS-QI*TLTQMKVLISTLPCLKMPRGYNR 185
LL L+ L G Q+ T KVLI P +++PR + R
Sbjct: 203 LLTLLDSPLNKAGRLQVYIHTAKKVLIEVNPSVRIPRTFKR 243
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,703,838
Number of Sequences: 5004
Number of extensions: 32030
Number of successful extensions: 79
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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