Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_C18
(399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0465 + 25427065-25427113,25428099-25428227,25428387-254284... 28 2.4
11_03_0096 + 9956702-9956818,9957056-9957265 28 3.1
03_02_0839 - 11653332-11653373,11653515-11653586,11653678-11654223 28 3.1
01_05_0249 - 19903154-19903454,19904114-19904168,19904707-199047... 28 3.1
03_02_0909 - 12310460-12310759,12310882-12310989,12311099-123112... 27 4.1
01_02_0098 - 11087875-11089110,11091744-11092022 27 4.1
09_02_0165 + 5160776-5160858,5161130-5161208,5161292-5161384,516... 27 5.5
06_01_0721 - 5255422-5255790,5256287-5256660,5256845-5257192,525... 27 5.5
04_03_0817 + 20003128-20003189,20003270-20003693,20003788-20004345 27 5.5
12_02_0483 + 19546295-19546397,19547163-19547482,19547606-195486... 27 7.2
12_01_0984 - 9985300-9985804,9985894-9986933 26 9.5
12_01_0747 - 6724513-6724801,6725708-6726174 26 9.5
02_05_1227 - 35076047-35076217,35076737-35076797,35077038-350771... 26 9.5
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916... 26 9.5
>04_04_0465 +
25427065-25427113,25428099-25428227,25428387-25428479,
25428681-25428953,25429037-25429288,25429735-25430118,
25430243-25430483,25431986-25432736
Length = 723
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +2
Query: 248 CVAGGWAGGNAAKDLSKQADLMWRQSVWSSTIAAT 352
C +G + GG + ++A W WS AAT
Sbjct: 592 CTSGSFGGGGGEEYEDEEASSPWNNRSWSHDFAAT 626
>11_03_0096 + 9956702-9956818,9957056-9957265
Length = 108
Score = 27.9 bits (59), Expect = 3.1
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Frame = +2
Query: 26 GRIIIYGGR----GALGSACVNHFKSSNWWV-ANIDLNPNESADFNVAVPKDASWVQQEQ 190
GR GGR G + +A ++++W + P+ NVAV + Q E+
Sbjct: 13 GRAATLGGRRQLAGQVQAAARRRGHAASYWTWGSRSACPSTHGSQNVAVEMEEEEGQMEE 72
Query: 191 HVVNEL 208
HVV EL
Sbjct: 73 HVVQEL 78
>03_02_0839 - 11653332-11653373,11653515-11653586,11653678-11654223
Length = 219
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 197 VNELSNALQGQKVNAVICVAGGWAGGNAAKDLSKQADLMWR 319
++E+ L G ++ ++ GG AG AA K D +WR
Sbjct: 21 LSEVEGQLHGVNLDDLLRTGGGGAGAGAAAAGRKTVDEVWR 61
>01_05_0249 -
19903154-19903454,19904114-19904168,19904707-19904791,
19905140-19905511
Length = 270
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +2
Query: 209 SNALQGQKVNAVICVAGGWAGGNAAK--DLSKQADLMWRQ 322
SNA+ K+ V+ A G G +AAK ++ K AD+M ++
Sbjct: 53 SNAVAISKLRKVVATARGGGGSDAAKALEVCKAADVMHKE 92
>03_02_0909 -
12310460-12310759,12310882-12310989,12311099-12311272,
12311370-12311490,12311569-12311651,12311754-12312420,
12314073-12314440
Length = 606
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 337 RTPDRLPPHQVCLLTQVLGSVSACPTT 257
R+P R PPHQ L V +S+ TT
Sbjct: 112 RSPQRRPPHQRRFLKMVSSEISSVTTT 138
>01_02_0098 - 11087875-11089110,11091744-11092022
Length = 504
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 51 GARWGLLALITLNLPTGG 104
GARW L A ++ +LP+GG
Sbjct: 38 GARWALYARLSAHLPSGG 55
>09_02_0165 +
5160776-5160858,5161130-5161208,5161292-5161384,
5161462-5161650
Length = 147
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +3
Query: 99 GGSQI*TLTQMKVLISTL-PCLKMPRG 176
GG QI T+ K+L+ T PCLK PRG
Sbjct: 37 GGEQI--RTREKLLVHTYWPCLKKPRG 61
>06_01_0721 -
5255422-5255790,5256287-5256660,5256845-5257192,
5257369-5257497,5257585-5257658,5257745-5257816,
5257901-5257969,5258059-5258130,5258208-5258279,
5258512-5258583,5258735-5258806,5258887-5258958,
5259050-5259121,5259203-5259274,5259427-5259498,
5259599-5259670,5259764-5259832,5260072-5260143,
5260428-5260499,5260579-5260650,5260919-5260990,
5261015-5261161,5261249-5261378,5262212-5262290
Length = 931
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 26 GRIIIYGGRGALGSACVNHFKSSNWWVANIDLNPN 130
G + +YG RG + C+ + + W +N DL N
Sbjct: 90 GIVSMYGRRGGVLCCCLEMWLAGAWTRSNFDLKSN 124
>04_03_0817 + 20003128-20003189,20003270-20003693,20003788-20004345
Length = 347
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Frame = -3
Query: 379 TRRQVFCS*CGCDCRTPDRLPPHQVCLLTQVLGSVSACPTTSDANN-SIHFL 227
T C CG + LP +CL +V ACP + N S+H L
Sbjct: 294 TPAAALCKACGAGEASMLLLPCRHLCLCRGCEAAVDACPVCAATKNASLHVL 345
>12_02_0483 +
19546295-19546397,19547163-19547482,19547606-19548611,
19549890-19549985,19550500-19551551
Length = 858
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 93 EDLK*LTQADPSAPLPPYIMI 31
EDL +Q PS+P+PPY I
Sbjct: 820 EDLVQCSQIKPSSPIPPYYSI 840
>12_01_0984 - 9985300-9985804,9985894-9986933
Length = 514
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 95 NWWVANIDLNPNESADFNVAVPKDASWVQQEQHVVNELSNALQGQKVN 238
++W++ +DL A+ + KD + Q ++ NEL N Q VN
Sbjct: 29 DYWISKVDLLLRWIAEGFIPEVKDQALYQVAENYFNELINRSMIQPVN 76
>12_01_0747 - 6724513-6724801,6725708-6726174
Length = 251
Score = 26.2 bits (55), Expect = 9.5
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +2
Query: 227 QKVNAVICVAGGWAGGNAAKDLSKQADLMWRQSVWSSTIAATLAAKYLAPGG 382
QK A + GG AA+++ K+A W + AA + K A GG
Sbjct: 42 QKAVAAAALGGGSWDAAAAEEVCKKAAAAVGGGSWDAAAAAEVCKKGAAVGG 93
>02_05_1227 -
35076047-35076217,35076737-35076797,35077038-35077123,
35077213-35077301,35077685-35077766,35078094-35078136,
35078211-35078284,35078492-35078561,35078747-35078816,
35079275-35079369,35079473-35079549,35080725-35080760
Length = 317
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 47 GRGALGSACVNHFKS-SNWWVANIDLNPNESADFNVA 154
G GA S C+ +++ +NWW++ + +ES+ +VA
Sbjct: 76 GSGAK-SVCICYYEQDNNWWISKVVRKKHESSVTSVA 111
>01_03_0256 + 14288885-14288936,14289362-14291335,14291648-14291673,
14291855-14292025,14292560-14292647,14292711-14292802,
14292920-14293384,14293860-14294633,14294890-14295087,
14296940-14297374,14297455-14297688,14298042-14298323
Length = 1596
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -3
Query: 292 QVLGSVSACPTTSDANNSIHFLTLQSVT*FVDYMLLL 182
+ L S+ P T D N S+ + L ++ DY+ LL
Sbjct: 984 RALLSIGVIPATVDPNRSVDYSYLLKLSSLADYLALL 1020
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,399,372
Number of Sequences: 37544
Number of extensions: 259716
Number of successful extensions: 819
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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