Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_C18
(399 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g79110.2 68414.m09225 expressed protein 30 0.49
At1g79110.1 68414.m09224 expressed protein 30 0.49
At1g41650.1 68414.m04798 hypothetical protein 29 1.1
At2g45900.1 68415.m05708 expressed protein 28 2.6
At2g33600.1 68415.m04118 cinnamoyl-CoA reductase family similar ... 28 2.6
At1g32220.1 68414.m03963 expressed protein 28 2.6
At5g07070.1 68418.m00800 CBL-interacting protein kinase 2 (CIPK2... 27 3.5
At4g05636.1 68417.m00878 hypothetical protein 27 3.5
At3g21250.1 68416.m02685 ABC transporter family protein similar ... 27 3.5
At5g13900.1 68418.m01626 protease inhibitor/seed storage/lipid t... 27 4.6
At2g33480.1 68415.m04104 no apical meristem (NAM) family protein... 27 4.6
At5g26280.1 68418.m03137 meprin and TRAF homology domain-contain... 27 6.1
At5g26260.1 68418.m03133 meprin and TRAF homology domain-contain... 26 8.0
At4g28220.1 68417.m04044 NADH dehydrogenase-related similar to 6... 26 8.0
At2g02450.2 68415.m00185 no apical meristem (NAM) family protein... 26 8.0
At2g02450.1 68415.m00184 no apical meristem (NAM) family protein... 26 8.0
At1g11100.1 68414.m01271 SNF2 domain-containing protein / helica... 26 8.0
>At1g79110.2 68414.m09225 expressed protein
Length = 355
Score = 30.3 bits (65), Expect = 0.49
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 397 SQGK*STRRQVFCS*CGCDCRTPDRLPPHQVCLLTQVLGSVSACP-TTSDANNSIH 233
+Q K RR+ C CG + LP +CL SV CP TS N S+H
Sbjct: 295 AQDKAERRRRRMCRNCGEEESCVLLLPCRHLCLCGVCGSSVHTCPICTSPKNASVH 350
>At1g79110.1 68414.m09224 expressed protein
Length = 358
Score = 30.3 bits (65), Expect = 0.49
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 397 SQGK*STRRQVFCS*CGCDCRTPDRLPPHQVCLLTQVLGSVSACP-TTSDANNSIH 233
+Q K RR+ C CG + LP +CL SV CP TS N S+H
Sbjct: 298 AQDKAERRRRRMCRNCGEEESCVLLLPCRHLCLCGVCGSSVHTCPICTSPKNASVH 353
>At1g41650.1 68414.m04798 hypothetical protein
Length = 178
Score = 29.1 bits (62), Expect = 1.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 335 NSRPIAATSSLPAYSGPWQRFRLPNHQRRK*QHSLS 228
N+RPI +LP+YS PW +HQ HS++
Sbjct: 82 NTRPI----TLPSYSTPWSSIITHHHQHHSTGHSIT 113
>At2g45900.1 68415.m05708 expressed protein
Length = 720
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 113 IDLNPNESADFNVAVPKDASWVQQEQHVVNELSNAL 220
+D N +E +F + VP+D ++EQ V++ LS A+
Sbjct: 407 LDSNNHEETEF-MPVPEDTRMEEEEQTVMDSLSEAI 441
>At2g33600.1 68415.m04118 cinnamoyl-CoA reductase family similar to
cinnamoyl-CoA reductase from Pinus taeda [GI:17978649],
Eucalyptus gunnii [GI:2058311]
Length = 321
Score = 27.9 bits (59), Expect = 2.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 14 IMTSGRIIIYGGRGALGSACVNHFKSSNWWV 106
++ G++ + G G LGS VNH S +++V
Sbjct: 3 VVQKGKVCVTGAGGFLGSWVVNHLLSRDYFV 33
>At1g32220.1 68414.m03963 expressed protein
Length = 296
Score = 27.9 bits (59), Expect = 2.6
Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Frame = +2
Query: 5 IDVI--MTSGRIIIYGGRGALGSACVNHFKSSNWWVANIDLNPNESADFNVAVPKDASWV 178
ID++ + S R+++ GG G +GSA S+ + + ++ + +F + +WV
Sbjct: 54 IDIVADVKSERVVVLGGNGFVGSAICKAAISNG--IEVVSVSRSGRPNFEDSWLDQVTWV 111
Query: 179 QQEQHVVNELSNALQGQKVNAVICVAGGWAGGNAAKDLSKQADL 310
+ +N L G AV+ GG+ K ++ +A++
Sbjct: 112 TGDVFYLN-WDEVLLG--ATAVVSTIGGFGNEEQMKRINGEANV 152
>At5g07070.1 68418.m00800 CBL-interacting protein kinase 2 (CIPK2)
identical to CBL-interacting protein kinase 2
[Arabidopsis thaliana] gi|9280636|gb|AAF86506
Length = 456
Score = 27.5 bits (58), Expect = 3.5
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Frame = +2
Query: 83 FKSSNWWVANID------LNPNESADFNVAVPKDASWVQQEQHVVNELSNALQGQKV-NA 241
FK +W+ + L+PN +A K++SW ++ H+ + ++ Q+V A
Sbjct: 229 FKCPSWFAPEVKRLLCKMLDPNHETRITIAKIKESSWFRKGLHLKQKKMEKMEKQQVREA 288
Query: 242 VICVAGGWAGGN 277
+ G +G N
Sbjct: 289 TNPMEAGGSGQN 300
>At4g05636.1 68417.m00878 hypothetical protein
Length = 193
Score = 27.5 bits (58), Expect = 3.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 335 NSRPIAATSSLPAYSGPWQRFRLPNHQRRK*QHSLS 228
N+RP +LP+YS PW +HQ HS++
Sbjct: 97 NTRPF----TLPSYSTPWSSIITHHHQHHSTGHSIT 128
>At3g21250.1 68416.m02685 ABC transporter family protein similar to
MRP-like ABC transporter GB:AAC49791 from [Arabidopsis
thaliana]
Length = 1294
Score = 27.5 bits (58), Expect = 3.5
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -3
Query: 226 TLQSVT*FVDYMLLLLYPRGIFRHGNVEIS 137
TLQ+VT F +LL+L P+G G V +S
Sbjct: 956 TLQNVTLFTCALLLILIPKGYIAPGLVGLS 985
>At5g13900.1 68418.m01626 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein contains Pfam
protease inhibitor/seed storage/LTP family domain
PF00234
Length = 151
Score = 27.1 bits (57), Expect = 4.6
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 224 GQKVNAVICVAGGWAGGNAAKDLSKQADLMWRQSVWSSTIA 346
G+ VN + C+ GG+ D S + QS W +T+A
Sbjct: 98 GEHVNPIACLTRS-RGGSTNSDRSSSIGNTFSQSYWMTTLA 137
>At2g33480.1 68415.m04104 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
Length = 268
Score = 27.1 bits (57), Expect = 4.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 170 SWVQQEQHVVNELSNALQGQKVNAVIC 250
+WV E +V+ ++L GQ +N V+C
Sbjct: 129 NWVLHEYRLVDSQQDSLYGQNMNWVLC 155
>At5g26280.1 68418.m03137 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein low similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 350
Score = 26.6 bits (56), Expect = 6.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 21 PAEGSLYTAAGARWGLLALITLNLPTGGS 107
P E S++ AAG +W L+ + N GG+
Sbjct: 78 PYESSVFEAAGYKWRLVLYVNGNKNDGGN 106
>At5g26260.1 68418.m03133 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 351
Score = 26.2 bits (55), Expect = 8.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 21 PAEGSLYTAAGARWGLLALITLNLPTGG 104
P E S++ AAG +W L+ + N P GG
Sbjct: 79 PYESSIFEAAGYKWRLVLYVKGN-PKGG 105
>At4g28220.1 68417.m04044 NADH dehydrogenase-related similar to 64
kDa mitochondrial NADH dehydrogenase [Neurospora crassa]
GI:4753821, alternative NADH-dehydrogenase [Yarrowia
lipolytica] GI:3718005; contains Pfam profile PF00070:
Pyridine nucleotide-disulphide oxidoreductase
Length = 571
Score = 26.2 bits (55), Expect = 8.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 200 NELSNALQGQKVNAVICVAGGWAGGNAAKDL 292
NE +N + K V+ + GWAG + KDL
Sbjct: 38 NEEANKKEEHKKKKVVVLGTGWAGISFLKDL 68
>At2g02450.2 68415.m00185 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain
Length = 414
Score = 26.2 bits (55), Expect = 8.0
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 14/75 (18%)
Frame = -2
Query: 347 LRLSNSRPIAATSSLPAYSG--------PW--QRFRLPNHQRRK*QHSLSDLAKRYLVR* 198
+R SRPI +L YSG W +RLP+H+ K Q + L + Y
Sbjct: 141 IRSETSRPIGLKKTLVFYSGKAPKGTRTSWIMNEYRLPHHETEKYQKAEISLCRVYKRPG 200
Query: 197 LHVAPVVP----TRH 165
+ P VP TRH
Sbjct: 201 VEDHPSVPRSLSTRH 215
>At2g02450.1 68415.m00184 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain
Length = 379
Score = 26.2 bits (55), Expect = 8.0
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 14/75 (18%)
Frame = -2
Query: 347 LRLSNSRPIAATSSLPAYSG--------PW--QRFRLPNHQRRK*QHSLSDLAKRYLVR* 198
+R SRPI +L YSG W +RLP+H+ K Q + L + Y
Sbjct: 141 IRSETSRPIGLKKTLVFYSGKAPKGTRTSWIMNEYRLPHHETEKYQKAEISLCRVYKRPG 200
Query: 197 LHVAPVVP----TRH 165
+ P VP TRH
Sbjct: 201 VEDHPSVPRSLSTRH 215
>At1g11100.1 68414.m01271 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to RUSH-1alpha [Oryctolagus cuniculus]
GI:1655930; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1226
Score = 26.2 bits (55), Expect = 8.0
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -3
Query: 367 VFCS*CGCDCRTPDRLP-PHQVCLLTQVLGSVSACPTTSDANNSIHFL 227
VFC+ C C+C T D P C + + S+ + T +A +H L
Sbjct: 937 VFCNQCICECLTRDNNQCPLSYCKVGLEISSLFSRETLENAMLDLHKL 984
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,269,730
Number of Sequences: 28952
Number of extensions: 181868
Number of successful extensions: 565
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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