Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_C17
         (390 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   0.81 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   4.3  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   5.7  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    20   10.0 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          20   10.0 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    20   10.0 

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.4 bits (48), Expect = 0.81
 Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
 Frame = +1

Query: 97  PTGAPPSACFDMIPGHAADVQTVPAPYTITT-AVSSVKAGHSIDVVISGKTPEDKMAGIL 273
           P  AP SA   +           P P T ++ + +SV +  S  + I  K       G++
Sbjct: 11  PPPAPQSAATPISSSGMTSPAAAPPPATTSSGSPASVASNASAPLHIPAKRAAYDCEGVI 70

Query: 274 LEARQGDKIVGTWTVSPDDTFSQ 342
                     G W  SPD+ F Q
Sbjct: 71  RHH-------GQWNYSPDNHFEQ 86


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +2

Query: 77  WRLPALTPPEHRLARAST*SQGTLLMFRQYQRLT 178
           W L +  PP ++++   T SQ    +++    LT
Sbjct: 324 WSLTSSPPPPYQISAQPTPSQSPNQIYQPVTNLT 357


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -3

Query: 307 CRRSCHPDELPGGCR 263
           C R C  D +P  CR
Sbjct: 44  CARKCVKDSVPMTCR 58


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 19.8 bits (39), Expect = 10.0
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 340 ARRYHRGLRSKCRR 299
           +RR+ + L+  CRR
Sbjct: 260 SRRHRKNLKDPCRR 273


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 19.8 bits (39), Expect = 10.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 333 GIIGAYGP 310
           G IGAYGP
Sbjct: 198 GAIGAYGP 205


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 19.8 bits (39), Expect = 10.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 168 SALHHHYSCQLGK 206
           S +HHH +  LGK
Sbjct: 132 SHVHHHQTSLLGK 144


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,672
Number of Sequences: 336
Number of extensions: 2165
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8225022
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)