Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_C15
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    54   1e-08
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    27   1.6  
SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces p...    27   2.7  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    26   3.6  
SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase Exg3|Schizosaccha...    25   6.3  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 11/135 (8%)
 Frame = +3

Query: 120 DYYVDEDCLTINVYTXXXXX-XXXYPVILYIHAGGFYAFTGRSDVAGPHYFLDKD----- 281
           D+  DEDCL +N++          +PV+ +IH G                 L  D     
Sbjct: 75  DFKYDEDCLFLNIWVPAGEKPAEGWPVLYFIHGGWLQVGNPLHYRQCDPQDLQADGSPAK 134

Query: 282 VVLVTINYRLATLGFMSTGDELAP-----GNNGMKDQVMAMRWIQRNIAGFGGDPNCVTI 446
            +LV+  +RL   GF++ G EL        N G  DQ + + W  ++I  FGG+   + +
Sbjct: 135 FILVSPGHRLNLFGFLA-GKELLEEDPKSSNFGFWDQRLGLEWTYKHIESFGGNKENIAV 193

Query: 447 TGCSAGSISVMLHMI 491
            G SAGS S +  +I
Sbjct: 194 GGISAGSYSALFQLI 208



 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/12 (75%), Positives = 12/12 (100%)
 Frame = +2

Query: 2  RYAQPPVGELRF 37
          RYA+PPVG+LR+
Sbjct: 25 RYAKPPVGKLRW 36


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 30/136 (22%), Positives = 56/136 (41%), Gaps = 4/136 (2%)
 Frame = +3

Query: 189 YPVILYIHAGGFYAFTGRSDVA-GPHYFLDKDVVLVTINYRLATLGFMSTGDELAPGNNG 365
           +P  L+ H GG+      ++ +   H       V+V ++YRLA        ++  P    
Sbjct: 100 WPCFLWFHGGGWVLGNINTENSFATHMCEQAKCVVVNVDYRLAP-------EDPFPAC-- 150

Query: 366 MKDQVMAMRWIQRNIAGFGGDPNCVTITGCSAGS--ISVMLHMISPMSKGLFHRGISISA 539
           + D   A+ +   N    G +PN + + G SAG    +V+ H ++          + +  
Sbjct: 151 IDDGWEALLYCYENADTLGINPNKIAVGGSSAGGNIAAVLSHKVAASPANFPPLVLQLLV 210

Query: 540 SPVNKNRC-LETSEAW 584
            PV  N    +T ++W
Sbjct: 211 VPVCDNTANAKTHKSW 226


>SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 3   DMHNRLSGNSGSTSKTDINYKDVVDASKEGP 95
           DM+N  +G + S  + D+N +D  D +  GP
Sbjct: 14  DMNNNENGQAQSNYEYDVNVQDEEDEAAAGP 44


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
 Frame = +1

Query: 166 PTT--NRRSHTQ*YCTYT-LVVSTRSLDGAMSPDHTTS*IRMSCSSLSTIV*QLSAL*VR 336
           PTT  N +SHT  Y TYT   +   ++D ++ P H+T       S+LST+    ++  + 
Sbjct: 151 PTTSYNNQSHTLIYSTYTSTYLPNSTIDLSILP-HST------ISTLSTVSINDTSASLS 203

Query: 337 ETNSHPATTE*RTR*WRCDGY------SGTSQGSVEI 429
           +T S  A T   T      GY      SGT+ G+VE+
Sbjct: 204 KTTSPTAGTITETIVSGSVGYTSTFPASGTTSGTVEV 240


>SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase
           Exg3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 464

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 388 CDGYSGTSQGSVE 426
           CDG+SGTS G  E
Sbjct: 146 CDGHSGTSSGKAE 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,341
Number of Sequences: 5004
Number of extensions: 53751
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)