Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_C14
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe...    30   0.21 
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    29   0.48 
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    29   0.63 
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    28   1.1  
SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr 1||...    26   3.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   4.5  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   5.9  
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe...    25   5.9  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    25   5.9  
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom...    25   5.9  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   5.9  
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz...    25   5.9  

>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 30.3 bits (65), Expect = 0.21
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 374 QTLPLISAKQIGGRPNLSASGAGVWNFDKNTRLSAGGSLSTMGRGKP 514
           QT P       G +PN +++  G+  F +N + + GGSL      KP
Sbjct: 58  QTKPQTGGSLFGNKPNATSTTPGLNLFGQNPQAAPGGSLFGASTTKP 104


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = -3

Query: 404 FALLISRAAFAFLLDQSNLPPKFEVSP--AGPKTLVPYACPSNLPRSSLKNCRVYPALPN 231
           F   +S ++ +F  +   +P KF ++P  A    + P     +   +S+ +   + A+P 
Sbjct: 126 FTTSVSASSDSFP-NSPTVPSKFSLNPSVATSTNISPRRHAKSHSVASVSSPNSHNAVPF 184

Query: 230 NPSSFCPSVPNTFPLP 183
            P +F P V N  PLP
Sbjct: 185 TPHAFVPPVNNASPLP 200


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 91  MPPSYKERYPEYYKFSKQARHPRDVTWDKNIGNGKV 198
           +PPS+  +YP  Y FS  AR  R V   K+I  G++
Sbjct: 667 VPPSHNGQYPGLYLFSNPARMVRPV---KHISTGEL 699


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +2

Query: 368  RMQTLPLISAK-QIGGRPNLSASGAGVWNFDKNTRLSAGGSLSTMGRGKPDVAFQVHSST 544
            +++ + LISA   I   P++S +     + DKN R S  GS+S +   K   +   HS+ 
Sbjct: 1073 QLERVQLISAGVDINSLPDVSTTKPLRKSLDKNIRQSRSGSIS-LKHSKSFQSASTHSTK 1131

Query: 545  ISKADVV 565
             S  ++V
Sbjct: 1132 SSSVEIV 1138


>SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 186

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +2

Query: 353 WIGLIRMQTLPLISAKQIGGRPNLSA-SGAGVWNFDKNTRLSAGGSLSTMGRGKPDV 520
           W+     +  P +S    GG P+LSA  G G  +F +   L   G+       +P++
Sbjct: 117 WVDEDEQEAQPEVSPFGAGGMPDLSALGGMGGMDFSQFGNLGGAGAGEDASDSEPEL 173


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = -3

Query: 332  VSPAGPKTLVPYACPSNLPRSSLKNCRVYPALPNNP-SSFCPSVPNTFP 189
            V P  P  +     PS+ P       ++ PA+PN P  S  PSV    P
Sbjct: 1458 VQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPP 1506


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -3

Query: 251 VYPALPNNPSS-FCPSVPNTFP 189
           V P +P +PSS F P  P TFP
Sbjct: 306 VSPNIPVSPSSSFVPMYPTTFP 327


>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +2

Query: 386 LISAKQIGGRPNLSASGAGVWNFDKNTRLSAGGSLSTMGRGKPDVAFQVHSSTISKADVV 565
           LI +K+ GG+  L A GAG         L+    L       P V  +V+SS I K + +
Sbjct: 56  LIKSKKFGGKGVLFAGGAGTGK--TALALAIAQELGPKVPFCPMVGSEVYSSEIKKTEAL 113

Query: 566 V 568
           +
Sbjct: 114 M 114


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 347 PPKFEVSPAGPKTLVPYACPSNLPRSSLKNCRVYPAL 237
           PP+F  S AG +       PS+L  SS+ + RV P++
Sbjct: 143 PPQFFHSEAGERPTPSVGAPSSL-ASSMDSVRVAPSM 178


>SPBC32F12.02 |rec14||recombination protein
           Rec14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +2

Query: 239 KLDTRGSFSMTIAVSWKGKHTAPGFWVRQATPQTSEAGWI-GLIRMQTLPLISAKQIGGR 415
           +LDT+G F + I  S  G+    G    Q    ++E G +  ++   T P+ S     G 
Sbjct: 140 ELDTKGKFGLCIDYSPNGRFIVSGHQTGQLFLISTETGRLFHVLSGHTSPVRSVAFSPGS 199

Query: 416 PNLSASG 436
             L+A+G
Sbjct: 200 TLLAAAG 206


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 246  SSFTE*SIVILSECTEYFSVAY 181
            S FTE S  + SEC  YF+  +
Sbjct: 1273 SDFTEDSFTLTSECLRYFNYGH 1294


>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 265

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
 Frame = -3

Query: 362 DQSNLPPKFEVSPAGPKTLVPYACPSNLPRSSLKNCR-VYPALPNNPSSFCPSVPNTF 192
           +++N+PP     P GP     +      P+   K  R  +P  P+N     P   + F
Sbjct: 207 NRTNIPPGARYDPTGPGDFRGFGRDERKPQFPFKGPRSQFPGEPDNDDFMPPGSSDMF 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,662,596
Number of Sequences: 5004
Number of extensions: 59494
Number of successful extensions: 202
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)