Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_C14
         (571 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024859-18|AAK29974.1|  121|Caenorhabditis elegans Hypothetical...    29   2.4  
Z81564-6|CAB04572.1|  678|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AF016853-1|AAB94552.1|  678|Caenorhabditis elegans HMP-2 protein.      28   4.1  
U41535-13|AAB63405.1| 1075|Caenorhabditis elegans Hypothetical p...    28   5.4  
U58757-9|AAM75377.1|  503|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U58757-8|AAC47918.3|  506|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    27   9.5  

>AC024859-18|AAK29974.1|  121|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.5 protein.
          Length = 121

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 82  QVSMPPSYKERYPEYY-KFSKQARHPRDVTWDK 177
           +V +PP+  ER  +Y  KFS   RHP    W K
Sbjct: 4   EVEVPPTTYERLQQYKEKFSDALRHPDSPDWYK 36


>Z81564-6|CAB04572.1|  678|Caenorhabditis elegans Hypothetical
           protein K05C4.6 protein.
          Length = 678

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -2

Query: 318 TQNPGAVCLPFQLTAIV--IEKLPRVSSFTE*SIVILSECTEYFSVA 184
           T+N   VC    + A+V  I +LP V   TE ++  L  CT   S+A
Sbjct: 362 TRNKQTVCSHGGIDALVTAIRRLPEVEEVTEPALCALRHCTARHSLA 408


>AF016853-1|AAB94552.1|  678|Caenorhabditis elegans HMP-2 protein.
          Length = 678

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -2

Query: 318 TQNPGAVCLPFQLTAIV--IEKLPRVSSFTE*SIVILSECTEYFSVA 184
           T+N   VC    + A+V  I +LP V   TE ++  L  CT   S+A
Sbjct: 362 TRNKQTVCSHGGIDALVTAIRRLPEVEEVTEPALCALRHCTARHSLA 408


>U41535-13|AAB63405.1| 1075|Caenorhabditis elegans Hypothetical
            protein F18A1.1 protein.
          Length = 1075

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +1

Query: 265  NDDRGKLEGQAYGTRVLGPAGDTSNFGGRLDWSNKNANAALDISKANRRK 414
            N+D+GK E +     VL   G+T        W  +  N AL+  KA+ R+
Sbjct: 891  NEDQGKYEKEGLPIAVLTGLGETK-------WKGRTKNMALEARKADERE 933


>U58757-9|AAM75377.1|  503|Caenorhabditis elegans Hypothetical
           protein C01B10.6b protein.
          Length = 503

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
 Frame = -3

Query: 320 GPKTLVPYA-CPSNLPRSSLKNCRVYPALPNNPSSFCPSVPNTFPLPM 180
           G   L PY  C  N+      +C   P   + P   CP    T P P+
Sbjct: 364 GQNALSPYGVCYKNICSDQCFSCACSPGAKSPPDQSCPKPSPTDPTPV 411


>U58757-8|AAC47918.3|  506|Caenorhabditis elegans Hypothetical
           protein C01B10.6a protein.
          Length = 506

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
 Frame = -3

Query: 320 GPKTLVPYA-CPSNLPRSSLKNCRVYPALPNNPSSFCPSVPNTFPLPM 180
           G   L PY  C  N+      +C   P   + P   CP    T P P+
Sbjct: 367 GQNALSPYGVCYKNICSDQCFSCACSPGAKSPPDQSCPKPSPTDPTPV 414


>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element on
            autosome protein2 protein.
          Length = 1758

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = -3

Query: 350  LPPKFEVSPAGPKTLVPYACPSNLPRSSLKNCRVYPALP---NNPSSFCPSVPNTFPLP 183
            LPP   + P  P      A P N PR++L   ++ P  P    +PS    S P T  +P
Sbjct: 1278 LPPANTIMPPPPPYNQASAVPLNPPRTALPPLQLPPLQPLQSESPSWASMSAPPTALIP 1336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,039,031
Number of Sequences: 27780
Number of extensions: 351207
Number of successful extensions: 1103
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)