Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_C13
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    28   1.2  
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    26   4.7  
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom...    25   6.2  
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    25   8.2  

>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +1

Query: 235 SRR*RPANYLLLVDDYCEEKHCPGSIPGKERVMVTATVNQQN 360
           SR  R A+ LLLV      KHC G++ G ++ M+  TV ++N
Sbjct: 185 SRLLRTAHMLLLV----LHKHCKGAVEGYQKRMLHDTVVERN 222


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = +3

Query: 165 RDRPRCFVVVSPAVAPRRHGDEWVQAM 245
           R+  R F+ ++PA+AP+++    V+++
Sbjct: 231 RNSVRAFIALAPAIAPKKYSGRTVKSI 257


>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 304

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = +2

Query: 212 SSSRRRVGPGDDGP-----LIIYYLSTTTARRSTAQGVFQAKNESW*QQLL 349
           S+S  R+ P  + P     +++YY+    A RS  + +   ++E W   LL
Sbjct: 180 SNSLVRINPNTENPAKNKQIMVYYVDCKRAHRSLLRYIQAIQDEMWLANLL 230


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = -1

Query: 476 CLD*SPENLSCT 441
           CLD SPENLSCT
Sbjct: 209 CLD-SPENLSCT 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,916,832
Number of Sequences: 5004
Number of extensions: 36360
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)