Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_C13
         (587 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0532 - 3935661-3935720,3936314-3936412,3937804-3937908,393...    32   0.39 
05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948...    32   0.39 
03_06_0331 - 33181757-33181795,33182325-33182453,33182941-331829...    30   1.6  
08_02_0980 + 23255992-23256408,23256480-23256517,23256606-232566...    29   3.6  
08_02_1400 + 26779193-26779245,26779622-26779766,26779950-267810...    28   6.3  
06_01_0618 - 4492057-4492590,4492780-4493192,4493714-4494026,449...    27   8.4  

>07_01_0532 -
           3935661-3935720,3936314-3936412,3937804-3937908,
           3939474-3939666,3940434-3940513,3940607-3940904,
           3941139-3941431
          Length = 375

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 510 VAVVSTATLVDVSGLISGEPVLHHWSPEPFLSGACCLQ 397
           +A  + A  + V+G I G   + HWSP   L  +C L+
Sbjct: 110 LAAAAPAAAIRVAGAIPGSQPIGHWSPNCLLEESCILE 147


>05_06_0132 +
           25893241-25893435,25894266-25894487,25894567-25894863,
           25894944-25895111,25895201-25895368,25895456-25895536,
           25895704-25895770,25895874-25895971,25896587-25896659,
           25896753-25896823,25896919-25896968,25897698-25897810,
           25898182-25898300,25898629-25898721,25899025-25899051,
           25899422-25899823,25900467-25900513,25900612-25900651,
           25900733-25900795,25900881-25901018,25901873-25902031,
           25902111-25902164,25902324-25902392,25902514-25902643,
           25902909-25902949,25903133-25903178,25903200-25903357,
           25903560-25903605,25903702-25903853,25904022-25904243
          Length = 1202

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +2

Query: 440 WCRTGSPEISPDTSTRVAVDTTATPVKCYRRVLPTMRA-RNLAAHS 574
           W R+G P  +P+ + + A+  +AT V+  R   P +RA RN ++ S
Sbjct: 671 WARSGPPPAAPEHAMKAALPFSATCVRISRDSYPNLRALRNASSVS 716


>03_06_0331 -
           33181757-33181795,33182325-33182453,33182941-33182967,
           33183459-33183545,33183827-33183975,33185467-33185521,
           33185596-33187584,33188705-33188782
          Length = 850

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +2

Query: 116 PGQLRVRISSPSSDHRQGPAKMLRGCVASGCPSSSRRRVGPGDDGPLIIYYLSTTTA 286
           P    + +S P+S+ ++G     +GCV  G   S     GP   G L+  ++ T  A
Sbjct: 527 PSSQPMNLSPPTSEQKEGSTAPSKGCVPLGAEPSE----GPSTAGTLVHCHVDTNDA 579


>08_02_0980 +
           23255992-23256408,23256480-23256517,23256606-23256654,
           23256787-23256848,23256876-23256938,23256939-23257599
          Length = 429

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 484 GRRVWTNLRRTCPAPLESGALPIRCL 407
           G ++W   RR  P P E GA+  RCL
Sbjct: 98  GSQIWGTERRRWPEPEEGGAVRRRCL 123


>08_02_1400 +
           26779193-26779245,26779622-26779766,26779950-26781059,
           26781153-26781404,26782150-26782230,26782623-26782770,
           26782858-26783264,26783557-26783613
          Length = 750

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = -2

Query: 517 NRCC--SRVNSNPGR---RVWTNLRRTCPAPLESGALPIRCLLSPTLPP 386
           N CC  SR+N + G    R   +LR  CP+  +S    +RC   P+  P
Sbjct: 650 NYCCASSRINDSSGGGVIRYALHLRFLCPSSKKSSKSMLRCKSDPSSVP 698


>06_01_0618 -
           4492057-4492590,4492780-4493192,4493714-4494026,
           4495257-4495828,4498324-4498600
          Length = 702

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 202 RLPLVVTETSGSRR*RPANYLLLVDDYCEEKHCPGS 309
           R+ +VV  TSG  R   A   + V+D+   +H PGS
Sbjct: 35  RVGVVVDMTSGEGRRSLAGISMAVEDFHRRRHRPGS 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,323,683
Number of Sequences: 37544
Number of extensions: 304080
Number of successful extensions: 969
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)