Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_C13
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    29   2.4  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    29   2.4  
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog...    28   5.7  
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro...    28   5.7  

>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical
           protein K08C7.3b protein.
          Length = 3672

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 465 LVQTRLPGLLLTRLQHRLNATGECCQQCAPGTWQR 569
           +++ + P  LL R +H  N  G+ C++C PG  Q+
Sbjct: 309 ILEPQRPKSLLCRCEH--NTCGDMCERCCPGFVQK 341


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical
           protein K08C7.3a protein.
          Length = 3704

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 465 LVQTRLPGLLLTRLQHRLNATGECCQQCAPGTWQR 569
           +++ + P  LL R +H  N  G+ C++C PG  Q+
Sbjct: 309 ILEPQRPKSLLCRCEH--NTCGDMCERCCPGFVQK 341


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
           chain protein.
          Length = 3704

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 465 LVQTRLPGLLLTRLQHRLNATGECCQQCAPGTWQR 569
           +++ + P  LL R +H  N  G+ C++C PG  Q+
Sbjct: 309 ILEPQRPKSLLCRCEH--NTCGDMCERCCPGFVQK 341


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
           protein.
          Length = 3704

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 465 LVQTRLPGLLLTRLQHRLNATGECCQQCAPGTWQR 569
           +++ + P  LL R +H  N  G+ C++C PG  Q+
Sbjct: 309 ILEPQRPKSLLCRCEH--NTCGDMCERCCPGFVQK 341


>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
           domain protein 1 protein.
          Length = 1346

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 380 KHRRKRWRQQAPDRKGSGLQWCRTGSPEISPDTSTRVAVDTTAT 511
           + RRKR  ++A  ++    +  R    +ISP TS+ VA D  AT
Sbjct: 483 EERRKREEEEAEKQRKREEREVRFSKNDISPTTSSGVADDKKAT 526


>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
           protein.
          Length = 1346

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 380 KHRRKRWRQQAPDRKGSGLQWCRTGSPEISPDTSTRVAVDTTAT 511
           + RRKR  ++A  ++    +  R    +ISP TS+ VA D  AT
Sbjct: 483 EERRKREEEEAEKQRKREEREVRFSKNDISPTTSSGVADDKKAT 526


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,219,319
Number of Sequences: 27780
Number of extensions: 230084
Number of successful extensions: 666
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)