Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_C12
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    28   0.73 
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    28   0.97 
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    26   3.9  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    25   5.2  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   9.0  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    25   9.0  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   9.0  
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    25   9.0  

>SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 156

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +2

Query: 2   GKIVFLLLVALCVGVQSRYLIVSEPVYYIQHYEEPELLTSSRV 130
           GK+  LL+ A  + +Q  +  +  P+  ++H  E ELL ++RV
Sbjct: 3   GKVSSLLVFASFLIIQGAFATLVAPIGDLEHLSEIELLYTNRV 45


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +2

Query: 125 RVRRDAHGALTLNSDGTSGAGVKVPFAGNDKNIVSAI-GSLDLTNRQKLGAATAGVALDN 301
           R+ RD    +  N DGTSGA   + F G  K +   +  S D+++  K  AA   VALD 
Sbjct: 442 RIVRDIADVIEDNMDGTSGALYAIFFHGFAKGMKDTLEKSKDISS--KTWAAGLKVALDT 499

Query: 302 V 304
           +
Sbjct: 500 L 500



 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 281 AGVALDNVNGHGVSLTDTHIPG 346
           A  A+DN+   G SL   H+PG
Sbjct: 178 AKAAIDNLVSIGASLAHVHVPG 199


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -1

Query: 288 TPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSELSVRAPCASLRTLELVN 112
           TP + APS      S   ++  + ++ P +  T +P+P + S  S  +P  SLR   L  
Sbjct: 299 TPGIDAPSDLEAKFSDLGVSSVVSVTSPLQSCTNSPSPPLSSPASSASPSESLRNESLGI 358

Query: 111 SSGSS 97
            S  S
Sbjct: 359 KSAKS 363


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -1

Query: 309 PFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVPSE 163
           P T  S++  V++        S    + T+ ++ PA  + TP P  PS+
Sbjct: 155 PSTTDSSSTDVSSSDSVSTSASSSNASNTVSVTSPASSSATPLPNQPSQ 203


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = -1

Query: 312 WPFTLSSATPAVAAPSFCLLVKSKEPI-ALTIFLSLPAKGTLTPAPEVPSELS 157
           +PF   S  P    PS+  LV    P   LT+     + G L+ A  +PS  S
Sbjct: 271 YPFQQPSYNPNALVPSYTTLVSQLPPSPCLTV-----SSGPLSTASSIPSNCS 318


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 213 SLPAKGTLTPAPEVPSELSVRAPCASLRTLELVNS 109
           S+P  G     P VP + S +A   SLRT  ++ S
Sbjct: 210 SIPKVGETYNDPSVPKDFSRKAIHESLRTKNILQS 244


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 213 SLPAKGTLTPAPEVPSE 163
           SLPA GT TP+P V  +
Sbjct: 725 SLPAAGTATPSPVVSQQ 741


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 403 VVIVVEEIHFAGSCHLVSEPG 341
           +V +  +IHF+G+C+ V+  G
Sbjct: 397 IVSIPHQIHFSGTCYSVAAGG 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,153,918
Number of Sequences: 5004
Number of extensions: 43472
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)