Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_C12
         (522 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               30   1.3  
SB_8875| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.3  
SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89)                    29   1.8  
SB_17034| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_12036| Best HMM Match : G_glu_transpept (HMM E-Value=0)             29   1.8  
SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)             29   2.3  
SB_30941| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)                        29   2.3  
SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)         29   3.1  
SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023)                 28   4.1  

>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 25/63 (39%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -1

Query: 375 LPAAVT-LSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAK 199
           LPAAV  +   P     V+ TP    L  ATP VA      LVK+K P  L I      K
Sbjct: 256 LPAAVPPIKTKPAAPSPVKATPTVAPLVKATPMVAP-----LVKAKLPQPLRILYICEEK 310

Query: 198 GTL 190
           GT+
Sbjct: 311 GTV 313


>SB_8875| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 189

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 307 RPRSKSHGYTHPRVRRQGDSC 369
           RP S+SHG  HPRV    D+C
Sbjct: 92  RPTSQSHGNRHPRVPIDKDNC 112


>SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89)
          Length = 1354

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +1

Query: 322  SHGYTHPRVRRQGDSCRQSESLPQRLPRHHSEGFRHQKYARYRXCTQLQHC 474
            +H  T+PR R Q D C     LP+  P   +       +A Y  C +L HC
Sbjct: 1039 AHYLTYPR-RDQRDHCALPR-LPKTRPLRTTSLTPEATFAHYLTCPRLDHC 1087


>SB_17034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 210 LPAKGTLTPA-PEVPSELSVRAPCASLRTLELVNSSGSS 97
           L AKG L+   P    E  +RAPC+SL   E   SSG S
Sbjct: 13  LEAKGRLSERRPSAKCESILRAPCSSLEDKESDESSGLS 51


>SB_12036| Best HMM Match : G_glu_transpept (HMM E-Value=0)
          Length = 646

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 24/95 (25%), Positives = 45/95 (47%)
 Frame = +2

Query: 113 LTSSRVRRDAHGALTLNSDGTSGAGVKVPFAGNDKNIVSAIGSLDLTNRQKLGAATAGVA 292
           L   R  +DA   +    D T    ++  F  N  + V   G ++   R  + + T  ++
Sbjct: 398 LGDPRYMKDADKVVKKMVDQTHSNNLR-KFIDNRTHPVKYYGPINY--RTDVTSGTTHLS 454

Query: 293 LDNVNGHGVSLTDTHIPGFGDKVTAAGKVNLFHND 397
           + + +G+GVSLT +    FG K+ +  K+ + +ND
Sbjct: 455 VVDADGNGVSLTSSINKYFGSKIRSK-KLGIIYND 488


>SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1506

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +2

Query: 347 FGDKVTAAGKVNLFH---NDYHDITAKAFATRNMPDIAXVPNFNTV 475
           FGDK   A  +  FH   ND  D +  +  TR + D++ +P + TV
Sbjct: 587 FGDKWIGANTIRAFHHTDNDGIDASENSNLTRIIFDLSTLPMYETV 632


>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
          Length = 1026

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 310 PRSKSHGYTHPRVRRQGDSC 369
           P + SH YTH  VR  GD+C
Sbjct: 260 PHALSHNYTHLAVRYYGDAC 279


>SB_30941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 310 PRSKSHGYTHPRVRRQGDSC 369
           P + SH YTH  VR  GD+C
Sbjct: 260 PHALSHNYTHLAVRYYGDAC 279


>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1234

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -1

Query: 375  LPAAVTL-SPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAK 199
            LP  V+L S  PG       TP P +L+S TP+  +    L  K+  P++L+   S P  
Sbjct: 1042 LPVPVSLTSKTPGPVSLTSKTPGPVSLTSKTPSPVS----LTSKTPGPVSLSSKTSGPVS 1097

Query: 198  GT-LTPAP 178
             T  TP P
Sbjct: 1098 LTSKTPGP 1105


>SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1432

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
 Frame = +1

Query: 307  RPRSKSHGYTHPRVRRQGDSCRQSESLPQR--------LPRHHSEGFRHQKYARYR-XCT 459
            R R + HG  HPR   +     +S+ L  R        LPR + + +R + + R R   +
Sbjct: 1323 RDRDRYHGSEHPRSHERSSDYSRSKDLHPRSYDRGTDHLPRSYEKSYRREDHHRSREYSS 1382

Query: 460  QLQHCRWRNRT 492
              +H  +++RT
Sbjct: 1383 DHRHPSFKHRT 1393


>SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)
          Length = 1084

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +1

Query: 301 CKRPRSKSHGYTHPRVRRQGDSCRQS--ESLPQRLPRHHSEGFRHQK 435
           C  P  K+    HP  R+ GD+C     E + + LP  H E  R  K
Sbjct: 361 CSEPCPKTLECGHPCARKCGDTCTSKCIEKIEKTLPCGHKETVRCYK 407


>SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023)
          Length = 1016

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 478 TDSVEVGYXSDIWHISGGESLRCDVVVIVVEEIHFAGSCHLVSE 347
           TD V +   +D++  S G  L  D V +  +++H  G  HL S+
Sbjct: 493 TDDVHLT-SNDVYLTSDGVHLTSDDVHLTGDDVHLTGDVHLTSD 535


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,804,351
Number of Sequences: 59808
Number of extensions: 352018
Number of successful extensions: 1063
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)